Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13e02
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0174 + 15346123-15346207,15346350-15346502,15346623-153467... 29 3.9
05_05_0267 - 23704249-23704401,23704476-23704780,23704967-237056... 29 3.9
08_02_1241 - 25511462-25511614,25511690-25512499 29 5.2
08_02_0746 + 20721421-20721649,20722912-20722971,20723318-207233... 29 5.2
04_04_1677 + 35306232-35306328,35306697-35307248,35307324-353076... 29 5.2
04_04_1229 - 31906854-31907300,31907986-31908181,31908631-319087... 29 5.2
03_02_0886 - 12173913-12174065,12174140-12174685 29 5.2
04_04_0279 - 24109592-24111346,24111457-24111551,24113210-24113348 28 9.1
02_01_0447 - 3220489-3220560,3221287-3221420,3221500-3221731,322... 28 9.1
>09_04_0174 +
15346123-15346207,15346350-15346502,15346623-15346759,
15346856-15347005,15347405-15347506,15347832-15347996,
15348402-15348499,15348704-15348827,15349056-15349145,
15349555-15349599,15350438-15350833
Length = 514
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/63 (23%), Positives = 29/63 (46%)
Frame = -2
Query: 593 VSKIDNMQIYHCSHMKCDSSTASMCPSSFTKQEFSKGIQVVYYKAHYGHIIDEYTLPEEF 414
++K++ IY ++K D +T +S+ +Q + Y H+++E PE
Sbjct: 73 MAKMNPQGIYVNKNVKLDDLQVYGFDYDYTLSHYSEHLQCLIYDLAKKHLVNELKYPESC 132
Query: 413 KKY 405
KY
Sbjct: 133 LKY 135
>05_05_0267 -
23704249-23704401,23704476-23704780,23704967-23705674,
23707772-23708114,23708300-23708374,23708625-23708675,
23708747-23708818,23708903-23709042,23709227-23709280,
23709446-23709553,23709769-23709864,23709946-23710005,
23710352-23710411,23711699-23711927
Length = 817
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -2
Query: 605 KYTTV-SKIDNMQIYHCSHMKCDSSTASMCP 516
+Y T+ +I ++YHCSH + T CP
Sbjct: 715 RYKTIREEIQQKELYHCSHFQRTDHTFPTCP 745
>08_02_1241 - 25511462-25511614,25511690-25512499
Length = 320
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -2
Query: 605 KYTTV-SKIDNMQIYHCSHMKCDSSTASMCP 516
+Y T+ +I ++YHCSH + T CP
Sbjct: 218 RYKTIREEIQQKELYHCSHCQRTDHTFPTCP 248
>08_02_0746 +
20721421-20721649,20722912-20722971,20723318-20723377,
20723458-20723553,20723764-20723871,20724037-20724090,
20724275-20724414,20724499-20724570,20724642-20724692,
20724943-20725017,20725205-20725585,20726372-20727604,
20727679-20727831
Length = 903
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -2
Query: 605 KYTTV-SKIDNMQIYHCSHMKCDSSTASMCP 516
+Y T+ +I ++YHCSH + T CP
Sbjct: 801 RYKTIREEIQQKELYHCSHCQRTDHTFPTCP 831
>04_04_1677 +
35306232-35306328,35306697-35307248,35307324-35307608,
35308035-35308296,35308378-35308430,35308520-35308587,
35310331-35310420,35310502-35310586,35310822-35311254,
35312872-35313439,35313527-35314000
Length = 988
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 554 HMKCDSSTASMCPSSFTKQEFSKGIQVVYY 465
H K DS S+ PSS + S+G + VYY
Sbjct: 675 HAKTDSEVTSLAPSSPPRSPTSRGGRPVYY 704
>04_04_1229 -
31906854-31907300,31907986-31908181,31908631-31908756,
31909962-31910329,31910680-31910835,31910968-31911168,
31911230-31911375,31911439-31911865,31912527-31912627,
31913197-31913254
Length = 741
Score = 28.7 bits (61), Expect = 5.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 748 CNQQFNTLHLYELHIAG 698
CN +LHLYE+HI+G
Sbjct: 200 CNISLTSLHLYEVHISG 216
>03_02_0886 - 12173913-12174065,12174140-12174685
Length = 232
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -2
Query: 605 KYTTV-SKIDNMQIYHCSHMKCDSSTASMCP 516
+Y T+ +I ++YHCSH + T CP
Sbjct: 130 RYKTIREEIQQKELYHCSHCQRTDHTFPTCP 160
>04_04_0279 - 24109592-24111346,24111457-24111551,24113210-24113348
Length = 662
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -2
Query: 539 SSTASMCPSSFTKQEFSKGIQVVYYKAHYGHIIDEYTLPEEFKKYSIS 396
S T S P+ + + G ++ ++K GHII EY L ++ + IS
Sbjct: 363 SFTTSSAPNEDMRN--ASGEKIKHFKEESGHIIQEYFLSDDVPELIIS 408
>02_01_0447 -
3220489-3220560,3221287-3221420,3221500-3221731,
3221817-3222015,3222101-3222181,3222260-3222315,
3222493-3222623,3222700-3222847,3224151-3224321,
3224417-3224775,3224898-3225189
Length = 624
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -2
Query: 632 QDTEKRCDIKYTTVSKIDNMQI-YHCSHMKCDSSTASMCPSSFTKQEFSK 486
Q + K+ +TV K+ +I HCS C S PS+F+ + FSK
Sbjct: 220 QGSSKQRKKSCSTVMKLQFREIGLHCSLRTCGISRFVPTPSTFSHEVFSK 269
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,739,543
Number of Sequences: 37544
Number of extensions: 342934
Number of successful extensions: 981
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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