Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13e02
(750 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC093048-1|AAH93048.1| 398|Homo sapiens Bernardinelli-Seip cong... 33 0.83
BC041640-1|AAH41640.1| 398|Homo sapiens BSCL2 protein protein. 33 0.83
BC012140-1|AAH12140.1| 398|Homo sapiens BSCL2 protein protein. 33 0.83
BC009866-1|AAH09866.2| 400|Homo sapiens Bernardinelli-Seip cong... 33 0.83
BC004911-1|AAH04911.1| 398|Homo sapiens BSCL2 protein protein. 33 0.83
AK223606-1|BAD97326.1| 398|Homo sapiens seipin variant protein. 33 0.83
AK075317-1|BAC11543.1| 398|Homo sapiens protein ( Homo sapiens ... 33 0.83
AK027524-1|BAB55175.1| 287|Homo sapiens protein ( Homo sapiens ... 33 0.83
>BC093048-1|AAH93048.1| 398|Homo sapiens Bernardinelli-Seip
congenital lipodystrophy 2 (seipin) protein.
Length = 398
Score = 33.5 bits (73), Expect = 0.83
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = -2
Query: 596 TVSKIDNMQIYHCSHMKCDSSTASMCPSSFTKQEFSKG--IQVVYYKAHYGHIIDEYTLP 423
TVS + + Y+ CDSST S+C +KG +V+ Y Y + E LP
Sbjct: 59 TVSHLSPVHFYY--RTDCDSSTTSLCSFPVANVSLTKGGRDRVLMYGQPY-RVTLELELP 115
Query: 422 EEFKKYSISSLLRDTDCYT 366
E + L CYT
Sbjct: 116 ESPVNQDLGMFLVTISCYT 134
>BC041640-1|AAH41640.1| 398|Homo sapiens BSCL2 protein protein.
Length = 398
Score = 33.5 bits (73), Expect = 0.83
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = -2
Query: 596 TVSKIDNMQIYHCSHMKCDSSTASMCPSSFTKQEFSKG--IQVVYYKAHYGHIIDEYTLP 423
TVS + + Y+ CDSST S+C +KG +V+ Y Y + E LP
Sbjct: 59 TVSHLSPVHFYY--RTDCDSSTTSLCSFPVANVSLTKGGRDRVLMYGQPY-RVTLELELP 115
Query: 422 EEFKKYSISSLLRDTDCYT 366
E + L CYT
Sbjct: 116 ESPVNQDLGMFLVTISCYT 134
>BC012140-1|AAH12140.1| 398|Homo sapiens BSCL2 protein protein.
Length = 398
Score = 33.5 bits (73), Expect = 0.83
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = -2
Query: 596 TVSKIDNMQIYHCSHMKCDSSTASMCPSSFTKQEFSKG--IQVVYYKAHYGHIIDEYTLP 423
TVS + + Y+ CDSST S+C +KG +V+ Y Y + E LP
Sbjct: 59 TVSHLSPVHFYY--RTDCDSSTTSLCSFPVANVSLTKGGRDRVLMYGQPY-RVTLELELP 115
Query: 422 EEFKKYSISSLLRDTDCYT 366
E + L CYT
Sbjct: 116 ESPVNQDLGMFLVTISCYT 134
>BC009866-1|AAH09866.2| 400|Homo sapiens Bernardinelli-Seip
congenital lipodystrophy 2 (seipin) protein.
Length = 400
Score = 33.5 bits (73), Expect = 0.83
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = -2
Query: 596 TVSKIDNMQIYHCSHMKCDSSTASMCPSSFTKQEFSKG--IQVVYYKAHYGHIIDEYTLP 423
TVS + + Y+ CDSST S+C +KG +V+ Y Y + E LP
Sbjct: 59 TVSHLSPVHFYY--RTDCDSSTTSLCSFPVANVSLTKGGRDRVLMYGQPY-RVTLELELP 115
Query: 422 EEFKKYSISSLLRDTDCYT 366
E + L CYT
Sbjct: 116 ESPVNQDLGMFLVTISCYT 134
>BC004911-1|AAH04911.1| 398|Homo sapiens BSCL2 protein protein.
Length = 398
Score = 33.5 bits (73), Expect = 0.83
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = -2
Query: 596 TVSKIDNMQIYHCSHMKCDSSTASMCPSSFTKQEFSKG--IQVVYYKAHYGHIIDEYTLP 423
TVS + + Y+ CDSST S+C +KG +V+ Y Y + E LP
Sbjct: 59 TVSHLSPVHFYY--RTDCDSSTTSLCSFPVANVSLTKGGRDRVLMYGQPY-RVTLELELP 115
Query: 422 EEFKKYSISSLLRDTDCYT 366
E + L CYT
Sbjct: 116 ESPVNQDLGMFLVTISCYT 134
>AK223606-1|BAD97326.1| 398|Homo sapiens seipin variant protein.
Length = 398
Score = 33.5 bits (73), Expect = 0.83
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = -2
Query: 596 TVSKIDNMQIYHCSHMKCDSSTASMCPSSFTKQEFSKG--IQVVYYKAHYGHIIDEYTLP 423
TVS + + Y+ CDSST S+C +KG +V+ Y Y + E LP
Sbjct: 59 TVSHLSPVHFYY--RTDCDSSTTSLCSFPVANVSLTKGGRDRVLMYGQPY-RVTLELELP 115
Query: 422 EEFKKYSISSLLRDTDCYT 366
E + L CYT
Sbjct: 116 ESPVNQDLGMFLVTISCYT 134
>AK075317-1|BAC11543.1| 398|Homo sapiens protein ( Homo sapiens
cDNA FLJ90836 fis, clone Y79AA1002058, moderately
similar to Mus musculus Gng3lg mRNA. ).
Length = 398
Score = 33.5 bits (73), Expect = 0.83
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = -2
Query: 596 TVSKIDNMQIYHCSHMKCDSSTASMCPSSFTKQEFSKG--IQVVYYKAHYGHIIDEYTLP 423
TVS + + Y+ CDSST S+C +KG +V+ Y Y + E LP
Sbjct: 59 TVSHLSPVHFYY--RTDCDSSTTSLCSFPVANVSLTKGGRDRVLMYGQPY-RVTLELELP 115
Query: 422 EEFKKYSISSLLRDTDCYT 366
E + L CYT
Sbjct: 116 ESPVNQDLGMFLVTISCYT 134
>AK027524-1|BAB55175.1| 287|Homo sapiens protein ( Homo sapiens
cDNA FLJ14618 fis, clone NT2RP1001449, highly similar to
Mus musculus Gng3lg mRNA. ).
Length = 287
Score = 33.5 bits (73), Expect = 0.83
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = -2
Query: 596 TVSKIDNMQIYHCSHMKCDSSTASMCPSSFTKQEFSKG--IQVVYYKAHYGHIIDEYTLP 423
TVS + + Y+ CDSST S+C +KG +V+ Y Y + E LP
Sbjct: 59 TVSHLSPVHFYY--RTDCDSSTTSLCSFPVANVSLTKGGRDRVLMYGQPY-RVTLELELP 115
Query: 422 EEFKKYSISSLLRDTDCYT 366
E + L CYT
Sbjct: 116 ESPVNQDLGMFLVTISCYT 134
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,818,161
Number of Sequences: 237096
Number of extensions: 1879590
Number of successful extensions: 4786
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4786
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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