Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13e02
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote...    30   1.5  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    30   1.5  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    30   1.5  
Z81140-4|CAJ55247.1|  463|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z81140-3|CAJ55246.1|  453|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z38016-1|CAA86114.1|  856|Caenorhabditis elegans serine/threonin...    29   3.5  
AL117207-1|CAB60406.1|  856|Caenorhabditis elegans Hypothetical ...    29   3.5  
U13644-1|AAB52683.1|  437|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z82068-4|CAE17983.1|  185|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
             protein.
          Length = 10578

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/59 (32%), Positives = 31/59 (52%)
 Frame = -2

Query: 218   DEAGCKIECQNGKELAKKTSTDDIVEDESKLDTEMKTKVPVKTYSNTRKNVKFEDNKIG 42
             D+A  + E    ++L  + +     E +SKL+TE KTK  ++  S  +K  + ED K G
Sbjct: 10028 DKAHKQKESDEKQKLESEIAAKKSAEQKSKLETEAKTKKVIEDES-AKKQKEQEDKKKG 10085


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/59 (32%), Positives = 31/59 (52%)
 Frame = -2

Query: 218   DEAGCKIECQNGKELAKKTSTDDIVEDESKLDTEMKTKVPVKTYSNTRKNVKFEDNKIG 42
             D+A  + E    ++L  + +     E +SKL+TE KTK  ++  S  +K  + ED K G
Sbjct: 10048 DKAHKQKESDEKQKLESEIAAKKSAEQKSKLETEAKTKKVIEDES-AKKQKEQEDKKKG 10105


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/59 (32%), Positives = 31/59 (52%)
 Frame = -2

Query: 218   DEAGCKIECQNGKELAKKTSTDDIVEDESKLDTEMKTKVPVKTYSNTRKNVKFEDNKIG 42
             D+A  + E    ++L  + +     E +SKL+TE KTK  ++  S  +K  + ED K G
Sbjct: 10048 DKAHKQKESDEKQKLESEIAAKKSAEQKSKLETEAKTKKVIEDES-AKKQKEQEDKKKG 10105


>Z81140-4|CAJ55247.1|  463|Caenorhabditis elegans Hypothetical
           protein W10G6.2b protein.
          Length = 463

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +3

Query: 102 HFCFHFRVKFRFVLDNVIGGCLFSEL 179
           HF F  + K  FVLD++ GG LFS L
Sbjct: 200 HFSFQNKEKLYFVLDHLNGGELFSHL 225


>Z81140-3|CAJ55246.1|  453|Caenorhabditis elegans Hypothetical
           protein W10G6.2a protein.
          Length = 453

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +3

Query: 102 HFCFHFRVKFRFVLDNVIGGCLFSEL 179
           HF F  + K  FVLD++ GG LFS L
Sbjct: 190 HFSFQNKEKLYFVLDHLNGGELFSHL 215


>Z38016-1|CAA86114.1|  856|Caenorhabditis elegans serine/threonine
           kinase protein.
          Length = 856

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -1

Query: 444 NR*IHPPRGVQEVLNKLTVERYGLLHRAERRL*LGRP 334
           NR +HP   VQ+VLN+L  + +  L R++    LG P
Sbjct: 730 NRVLHPSVAVQQVLNQLNDKYHQCLVRSQELASLGLP 766


>AL117207-1|CAB60406.1|  856|Caenorhabditis elegans Hypothetical
           protein Y60A3A.1 protein.
          Length = 856

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -1

Query: 444 NR*IHPPRGVQEVLNKLTVERYGLLHRAERRL*LGRP 334
           NR +HP   VQ+VLN+L  + +  L R++    LG P
Sbjct: 730 NRVLHPSVAVQQVLNQLNDKYHQCLVRSQELASLGLP 766


>U13644-1|AAB52683.1|  437|Caenorhabditis elegans Hypothetical
           protein F56D2.5 protein.
          Length = 437

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -2

Query: 656 RLRSRAWRQDTEKRCDIKYTTVSKIDNMQIYHCSHMKCDSSTASMC 519
           R  +R W ++  K+C      + K +     HC+  KC++S   +C
Sbjct: 355 RFLNRGWLEENSKQCPKCLVYIEKDEGCNKMHCT--KCNASFCWLC 398


>Z82068-4|CAE17983.1|  185|Caenorhabditis elegans Hypothetical
           protein W04A4.6 protein.
          Length = 185

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -2

Query: 536 STASMCPSSFTKQEFSKGIQVVYYKAHYGHIIDEYTLPEEFKKYSISSLLR 384
           S  S   ++F K    K     + K+H    + E+ +PE  KKY I +L R
Sbjct: 119 SATSRMNATFGKSSSRKEAVKQFMKSHKSPKV-EFAIPENLKKYGIGNLPR 168


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,519,442
Number of Sequences: 27780
Number of extensions: 314628
Number of successful extensions: 1129
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)