Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13e01
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy...    38   0.002
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    29   0.77 
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   3.1  
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    27   4.1  
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.5  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    26   7.2  
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po...    25   9.5  
SPBC342.04 |||adhesion regulating molecule protein homolog|Schiz...    25   9.5  

>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 754

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 31/99 (31%), Positives = 41/99 (41%), Gaps = 5/99 (5%)
 Frame = -1

Query: 740 VLALCDALRDRVLPDLGVRLEDKPDRT-VVKLVSXXXXXXXXXXXXXXXXXXXXXXXXXX 564
           +L  CD  RD  +  LGV   D+P  + +VKLV                           
Sbjct: 614 ILKACDIFRDYDMAALGVSFNDRPQGSALVKLVDAEELIAAREQKLEEERAKQAKKAQAK 673

Query: 563 XXQRLKEEQK----KISPAEMFRKETDKYSKFDEKGLPT 459
             Q  K+ ++    K SP+EMF K   +Y  FDE GLPT
Sbjct: 674 AEQEKKQVERVMKGKTSPSEMF-KMFKEYLSFDEAGLPT 711


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = -1

Query: 308 FHYCILCIF*VRYIGLITSLLFSMKDIS-NSAQ-NIVFIFNLVYVALCLILEFLFNVLI* 135
           FH C+L +F + Y   I S  F     S NS +  ++F F  VY  L LI   +  +L  
Sbjct: 22  FHVCLLIMFLILYSQEILSFFFMCSKFSMNSLKFCVLFSFKTVYSLLKLIKTLIRKLLYC 81

Query: 134 F 132
           F
Sbjct: 82  F 82


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3

Query: 330 FFNDFFYFPLLYSLHFLSKIYRSNHFSFIF 241
           FF  FFYF L     F S ++ S HF+F F
Sbjct: 107 FFCFFFYFSLF---SFFSFLFTSLHFNFFF 133


>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 18/72 (25%), Positives = 35/72 (48%)
 Frame = -1

Query: 311 IFHYCILCIF*VRYIGLITSLLFSMKDISNSAQNIVFIFNLVYVALCLILEFLFNVLI*F 132
           +F +  +C+  +RY   +     S+K++   +   V+     ++ +CL+L   F V I F
Sbjct: 446 LFCWGSICLAHIRYRAAMKHQNRSLKEVGFVSPFNVYASYYAFILVCLVLAAEFYVSI-F 504

Query: 131 *LGNVKKNAAFF 96
            +G     +AFF
Sbjct: 505 PVGGKPDASAFF 516


>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 368

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +1

Query: 436 NSLPSWSCVGRPFSSNFEYLSVSFLNISAGDIFFCSSFKRCASSNSCFFLCFSAS 600
           +S  S+  +  P  S+F Y +V   ++ +G +   SS  R +S ++ F L  SAS
Sbjct: 168 HSRSSYYDLATPTRSSFSYNTVGAASLPSGGLSNLSSSLRSSSKSAGFSLFESAS 222


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
 Frame = +1

Query: 469 PFSSNFEYLSVSF------LNISAGDIFFCSSFKRCASSNS 573
           P  ++FEYL VS       LN+ A D+ FC++F R  S +S
Sbjct: 278 PGPNSFEYLLVSAFLTLTQLNLPAYDLNFCNNFIRKLSWSS 318


>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -1

Query: 236 KDISNSAQNIVFIFNLVYVALCLILEFLFNVLI 138
           KD+     +I+F+F ++ V L +I  ++FN+ I
Sbjct: 418 KDLQKLGISILFVFFIILVCLAVIF-YVFNIRI 449


>SPBC342.04 |||adhesion regulating molecule protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 291

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 767 AARAGQGGAVLALCDALRDRVLPDL 693
           +A+AG GG+ + LC+ L+   L DL
Sbjct: 177 SAQAGFGGSTVDLCEILKPSNLTDL 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,374,959
Number of Sequences: 5004
Number of extensions: 40256
Number of successful extensions: 117
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)