Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13e01
         (803 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0988 - 7806113-7806193,7806275-7806499,7806589-7806709,780...    32   0.61 
11_04_0376 - 16965504-16966101,16966212-16966416,16967175-169681...    29   5.7  
06_03_0793 + 24662506-24663512,24664470-24664787,24664996-246653...    28   10.0 
04_04_1190 + 31593727-31593847,31593965-31593996                       28   10.0 

>01_01_0988 -
           7806113-7806193,7806275-7806499,7806589-7806709,
           7807065-7807256,7807884-7807947,7808135-7808261,
           7808338-7808411,7808494-7808598,7808763-7808865,
           7808966-7809028,7809113-7809296,7809788-7809858
          Length = 469

 Score = 31.9 bits (69), Expect = 0.61
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 339 DCVFFNDFFYFPLLYSLHFLSKIYRSNHFSFIFYEGYFQQCS 214
           DC FF+ + Y  L+ +L F S  +R  H     +  Y + CS
Sbjct: 388 DCNFFSLYVYLVLMDNLLFSSDAFRDKHAIINSWRNYLRNCS 429


>11_04_0376 -
           16965504-16966101,16966212-16966416,16967175-16968197,
           16968241-16968892,16969025-16969387,16970095-16970451
          Length = 1065

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -3

Query: 639 RGTVKGERREEAFGSREAKKETGVTRGATFEGGTKENITRRNVQEGN 499
           + ++ G++  E F   E  K+T V RGA +      ++ R+ +Q  N
Sbjct: 449 QSSIHGQKEGEEFFRLEEDKQTEVPRGARYMSIMPRSLCRKRIQISN 495


>06_03_0793 + 24662506-24663512,24664470-24664787,24664996-24665323,
            24665465-24665887,24665960-24666252,24666332-24666605,
            24666856-24667358,24667464-24667785,24667875-24668220,
            24668339-24668997,24669524-24669625,24669656-24670052,
            24670155-24670270,24670360-24670386
          Length = 1704

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 14/46 (30%), Positives = 28/46 (60%)
 Frame = -1

Query: 278  VRYIGLITSLLFSMKDISNSAQNIVFIFNLVYVALCLILEFLFNVL 141
            +R +    S+LF++  ++  AQ+ +   +L+Y+    ILEF FN++
Sbjct: 1656 IRCLRFCYSILFTLFQLTKGAQDYLST-SLIYLICFEILEFKFNMI 1700


>04_04_1190 + 31593727-31593847,31593965-31593996
          Length = 50

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
 Frame = +2

Query: 422 GDPYST---PYPRGRAWVDPFHRTSNT 493
           GDP  T   PY RG AW  PF +++ T
Sbjct: 11  GDPEMTVPPPYVRGNAWPIPFKQSAGT 37


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,464,697
Number of Sequences: 37544
Number of extensions: 226191
Number of successful extensions: 579
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)