Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13e01
(803 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT009913-1|AAP88915.1| 748|Homo sapiens cysteinyl-tRNA syntheta... 79 1e-14
BC002880-1|AAH02880.1| 748|Homo sapiens cysteinyl-tRNA syntheta... 79 1e-14
AF288206-1|AAG00578.1| 748|Homo sapiens cytoplasmic cysteinyl-t... 79 1e-14
AK222614-1|BAD96334.1| 726|Homo sapiens cysteine-tRNA ligase is... 65 3e-10
AF288207-1|AAG00579.1| 726|Homo sapiens cysteinyl-tRNA syntheta... 65 3e-10
DQ454474-1|ABE66558.1| 101|Homo sapiens immunoglobulin heavy ch... 31 6.4
AF161370-1|AAF28930.1| 157|Homo sapiens HSPC107 protein. 30 8.5
>BT009913-1|AAP88915.1| 748|Homo sapiens cysteinyl-tRNA synthetase
protein.
Length = 748
Score = 79.4 bits (187), Expect = 1e-14
Identities = 50/114 (43%), Positives = 59/114 (51%), Gaps = 5/114 (4%)
Frame = -1
Query: 779 GVREAARAGQGGAVLALCDALRDRVLPDLGVRLEDKPDR-TVVKLVSXXXXXXXXXXXXX 603
GVR+ AR + +L L DALRD +LP+LGVR ED TVVKLV
Sbjct: 597 GVRKIAREQKVPEILQLSDALRDNILPELGVRFEDHEGLPTVVKLVDRNTLLKEREEKRR 656
Query: 602 XXXXXXXXXXXXXXXQRLKEEQK----KISPAEMFRKETDKYSKFDEKGLPTHD 453
++ +E K KI P+EMF ETDKYSKFDE GLPTHD
Sbjct: 657 VEEEKRKKKEEAARRKQEQEAAKLAKMKIPPSEMFLSETDKYSKFDENGLPTHD 710
>BC002880-1|AAH02880.1| 748|Homo sapiens cysteinyl-tRNA synthetase
protein.
Length = 748
Score = 79.4 bits (187), Expect = 1e-14
Identities = 50/114 (43%), Positives = 59/114 (51%), Gaps = 5/114 (4%)
Frame = -1
Query: 779 GVREAARAGQGGAVLALCDALRDRVLPDLGVRLEDKPDR-TVVKLVSXXXXXXXXXXXXX 603
GVR+ AR + +L L DALRD +LP+LGVR ED TVVKLV
Sbjct: 597 GVRKIAREQKVPEILQLSDALRDNILPELGVRFEDHEGLPTVVKLVDRNTLLKEREEKRR 656
Query: 602 XXXXXXXXXXXXXXXQRLKEEQK----KISPAEMFRKETDKYSKFDEKGLPTHD 453
++ +E K KI P+EMF ETDKYSKFDE GLPTHD
Sbjct: 657 VEEEKRKKKEEAARRKQEQEAAKLAKMKIPPSEMFLSETDKYSKFDENGLPTHD 710
>AF288206-1|AAG00578.1| 748|Homo sapiens cytoplasmic cysteinyl-tRNA
synthetase protein.
Length = 748
Score = 79.4 bits (187), Expect = 1e-14
Identities = 50/114 (43%), Positives = 59/114 (51%), Gaps = 5/114 (4%)
Frame = -1
Query: 779 GVREAARAGQGGAVLALCDALRDRVLPDLGVRLEDKPDR-TVVKLVSXXXXXXXXXXXXX 603
GVR+ AR + +L L DALRD +LP+LGVR ED TVVKLV
Sbjct: 597 GVRKIAREQKVPEILQLSDALRDNILPELGVRFEDHEGLPTVVKLVDRNTLLKEREEKRR 656
Query: 602 XXXXXXXXXXXXXXXQRLKEEQK----KISPAEMFRKETDKYSKFDEKGLPTHD 453
++ +E K KI P+EMF ETDKYSKFDE GLPTHD
Sbjct: 657 VEEEKRKKKEEAARRKQEQEAAKLAKMKIPPSEMFLSETDKYSKFDENGLPTHD 710
>AK222614-1|BAD96334.1| 726|Homo sapiens cysteine-tRNA ligase
isoform a variant protein.
Length = 726
Score = 64.9 bits (151), Expect = 3e-10
Identities = 44/107 (41%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Frame = -1
Query: 779 GVREAARAGQGGAVLALCDALRDRVLPDLGVRLEDKPD-RTVVKLVSXXXXXXXXXXXXX 603
GVR+ AR + +L L DALRD +LP+LGVR ED TVVKLV
Sbjct: 597 GVRKIAREQKVPEILQLSDALRDNILPELGVRFEDHEGLPTVVKLVDRNTLLKEREEKRR 656
Query: 602 XXXXXXXXXXXXXXXQRLKEEQK----KISPAEMFRKETDKYSKFDE 474
++ +E K KI P+EMF ETDKYSKFDE
Sbjct: 657 VEEEKRKKKEEAARRKQEQEAAKLAKMKIPPSEMFLSETDKYSKFDE 703
>AF288207-1|AAG00579.1| 726|Homo sapiens cysteinyl-tRNA synthetase
protein.
Length = 726
Score = 64.9 bits (151), Expect = 3e-10
Identities = 44/107 (41%), Positives = 53/107 (49%), Gaps = 5/107 (4%)
Frame = -1
Query: 779 GVREAARAGQGGAVLALCDALRDRVLPDLGVRLEDKPD-RTVVKLVSXXXXXXXXXXXXX 603
GVR+ AR + +L L DALRD +LP+LGVR ED TVVKLV
Sbjct: 597 GVRKIAREQKVPEILQLSDALRDNILPELGVRFEDHEGLPTVVKLVDRNTLLKEREEKRR 656
Query: 602 XXXXXXXXXXXXXXXQRLKEEQK----KISPAEMFRKETDKYSKFDE 474
++ +E K KI P+EMF ETDKYSKFDE
Sbjct: 657 VEEEKRKKKEEAARRKQEQEAAKLAKMKIPPSEMFLSETDKYSKFDE 703
>DQ454474-1|ABE66558.1| 101|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 101
Score = 30.7 bits (66), Expect = 6.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 460 VGRPFSSNFEYLSVSFLNISAGDIFFCSSFKRCASSNSCFF 582
+ R S N YL ++ L +++C+ R SSNSC++
Sbjct: 43 ISRDNSKNTLYLQMNSLRAEDTAVYYCAREGRFCSSNSCYY 83
>AF161370-1|AAF28930.1| 157|Homo sapiens HSPC107 protein.
Length = 157
Score = 30.3 bits (65), Expect = 8.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 472 FSSNFEYLSVSFLNISAGDIFFCSSFKRCASSNSC 576
FS N +L +SF NI ++FC FK + C
Sbjct: 61 FSPNQGHLKISFANIPGSILYFCPIFKSLPFISKC 95
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,197,374
Number of Sequences: 237096
Number of extensions: 1242046
Number of successful extensions: 3239
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3206
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9924838204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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