Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13e01
         (803 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trn...    68   9e-12
AF077541-8|AAK68426.1|  908|Caenorhabditis elegans Cysteinyl trn...    68   9e-12
AF038604-2|AAB92013.1|  468|Caenorhabditis elegans Hypothetical ...    31   0.97 
Z77657-7|CAH60768.1|  320|Caenorhabditis elegans Hypothetical pr...    31   1.3  
U29382-6|AAF99998.1|  379|Caenorhabditis elegans Hypothetical pr...    29   5.1  
Z78539-1|CAB01727.1|  350|Caenorhabditis elegans Hypothetical pr...    28   6.8  
AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical ...    28   6.8  
AL132859-5|CAB60490.2|  337|Caenorhabditis elegans Hypothetical ...    28   9.0  
AF040659-5|AAO12389.1|  674|Caenorhabditis elegans Half transpor...    28   9.0  
AF040659-4|AAK39394.1|  815|Caenorhabditis elegans Half transpor...    28   9.0  
AF026212-2|AAF99972.1| 1009|Caenorhabditis elegans Hypothetical ...    28   9.0  

>AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trna
            synthetase protein1, isoform a protein.
          Length = 909

 Score = 67.7 bits (158), Expect = 9e-12
 Identities = 42/113 (37%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
 Frame = -1

Query: 776  VREAARAGQGGAVLALCDALRDRVLPDLGVRLEDKPDRTVVKLVSXXXXXXXXXXXXXXX 597
            VR  A+  +   +L  CD LRD+ L +LGVRLED+  +TVVKLV                
Sbjct: 769  VRLIAKEHKVNGILEECDTLRDKTLTELGVRLEDRNGQTVVKLVDRATLLREQEQKDTEK 828

Query: 596  XXXXXXXXXXXXXQRLKEEQ----KKISPAEMFR--KETDKYSKFDEKGLPTH 456
                          R K ++    KKI P E+F+  +   KYSKFDE+G+PTH
Sbjct: 829  KRKDKEKADKEQKAREKADKEAAAKKIKPEELFKQGEHVGKYSKFDERGVPTH 881


>AF077541-8|AAK68426.1|  908|Caenorhabditis elegans Cysteinyl trna
            synthetase protein1, isoform b protein.
          Length = 908

 Score = 67.7 bits (158), Expect = 9e-12
 Identities = 42/113 (37%), Positives = 56/113 (49%), Gaps = 6/113 (5%)
 Frame = -1

Query: 776  VREAARAGQGGAVLALCDALRDRVLPDLGVRLEDKPDRTVVKLVSXXXXXXXXXXXXXXX 597
            VR  A+  +   +L  CD LRD+ L +LGVRLED+  +TVVKLV                
Sbjct: 768  VRLIAKEHKVNGILEECDTLRDKTLTELGVRLEDRNGQTVVKLVDRATLLREQEQKDTEK 827

Query: 596  XXXXXXXXXXXXXQRLKEEQ----KKISPAEMFR--KETDKYSKFDEKGLPTH 456
                          R K ++    KKI P E+F+  +   KYSKFDE+G+PTH
Sbjct: 828  KRKDKEKADKEQKAREKADKEAAAKKIKPEELFKQGEHVGKYSKFDERGVPTH 880


>AF038604-2|AAB92013.1|  468|Caenorhabditis elegans Hypothetical
           protein B0546.3 protein.
          Length = 468

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
 Frame = -3

Query: 330 FFNDFFYFPLLYSLHFLSKIYRSN----HFSFIFYEGYFQQCSKYSIYIQFSLCCFMSNT 163
           FF++F+ FP+++ + FL     +N    H  ++++  +FQ    +S +    + C    T
Sbjct: 389 FFSNFYTFPVVFEIDFLPIFLVANIVIFHSFYLYFPRFFQVSHNFSSFSVLFIYCIYYPT 448

Query: 162 R 160
           +
Sbjct: 449 K 449


>Z77657-7|CAH60768.1|  320|Caenorhabditis elegans Hypothetical
           protein F08H9.12 protein.
          Length = 320

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = -3

Query: 363 FYKYLLTSDCVFFNDFFYFPLLYSLHFLSKIYRSN---HFSFIFYEGYFQQCSKYSIYIQ 193
           FYK +L S  +F     YF +LY +   S+ Y+++    FS IF E Y     +  I+I 
Sbjct: 56  FYKMVLFSYFLFSTFILYFIVLYLIVRDSQAYKTSVIISFSLIFVESYIFHVIQQIIHIL 115

Query: 192 FSLCCFMSNTR 160
             L    ++ +
Sbjct: 116 LFLLAIANSIK 126


>U29382-6|AAF99998.1|  379|Caenorhabditis elegans Hypothetical
           protein R03H10.1 protein.
          Length = 379

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
 Frame = -3

Query: 630 VKGERREEAFGSREAKKETGVTRGATFEGGTKE---NITRRNVQE 505
           ++G+R +E  G    KK+T + R ++ +GG+K+   ++  + +QE
Sbjct: 291 LEGKREKENSGKSPLKKKTSIRRVSSTKGGSKKRRSSLVTKKIQE 335


>Z78539-1|CAB01727.1|  350|Caenorhabditis elegans Hypothetical
           protein C31E10.1 protein.
          Length = 350

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
 Frame = -3

Query: 363 FYKYLLTSDCVFFNDFFYF-------PLLYSLHFLSKIYRSNHFSFIFYEGYFQQCSKYS 205
           FYKYL+T   VF  D FY        P +YS      ++R+   S    E  F     Y 
Sbjct: 42  FYKYLMTYIYVF--DLFYAVWDIITNPTVYSYGPAFVVFRNYDNSMFTREMSFYMVLVYC 99

Query: 204 IYIQFSLCCF 175
               FSL CF
Sbjct: 100 GCFAFSLACF 109


>AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical
            protein Y46G5A.6 protein.
          Length = 1002

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = -3

Query: 333  VFFNDFFYFPLLYSLHFLSKIYRSNHFSFIFYEGYFQ-QCSKYSIYIQF 190
            +F N FF+F  ++   F  +I+R  +F  IF++ + + Q     I+ QF
Sbjct: 934  LFLNFFFHFENMHFFKFSLQIWRHFYFQPIFFQFFSESQAIMIPIFNQF 982


>AL132859-5|CAB60490.2|  337|Caenorhabditis elegans Hypothetical
           protein Y39C12A.5 protein.
          Length = 337

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 260 ITSLLFSMKDISNSAQNIVFIFNLVYVALCLILEFLF 150
           I S++FS     N  + + FIFNL Y  L +   F F
Sbjct: 226 ILSVIFSFSATPNVQRLLKFIFNLSYTLLTIFGPFFF 262


>AF040659-5|AAO12389.1|  674|Caenorhabditis elegans Half transporter
           (pgp related)protein 9, isoform b protein.
          Length = 674

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = -1

Query: 332 YFLMIFFIFHYCILCIF*VRYIGLITSLLFSMKDISNSAQNIVFIFNLVYVA 177
           Y +  FF+F Y +  +F   Y G + + +F  K         VFI  ++ +A
Sbjct: 205 YGMAFFFLFCYSLSRVFIPYYTGEVVTAVFGDKASYEKLHKTVFIMGMLSLA 256


>AF040659-4|AAK39394.1|  815|Caenorhabditis elegans Half transporter
           (pgp related)protein 9, isoform a protein.
          Length = 815

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = -1

Query: 332 YFLMIFFIFHYCILCIF*VRYIGLITSLLFSMKDISNSAQNIVFIFNLVYVA 177
           Y +  FF+F Y +  +F   Y G + + +F  K         VFI  ++ +A
Sbjct: 205 YGMAFFFLFCYSLSRVFIPYYTGEVVTAVFGDKASYEKLHKTVFIMGMLSLA 256


>AF026212-2|AAF99972.1| 1009|Caenorhabditis elegans Hypothetical
           protein F52G3.4 protein.
          Length = 1009

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -1

Query: 323 MIFFIFH-YCILCIF*VRYIGLITSLLFSMKDISNSAQN 210
           M FF +H +CIL    +++I LITS+ F ++   N+  N
Sbjct: 1   MFFFSYHFFCILIFHIIKFI-LITSVSFLLEAAINAQTN 38


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,166,363
Number of Sequences: 27780
Number of extensions: 225891
Number of successful extensions: 660
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)