Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13d22
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.54 
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    27   2.2  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    27   3.8  
SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit S18...    26   5.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   6.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 394 IAKFTGAFRVRPEGEGLRPAPRLCWERLPPLPG 492
           I K+T    +R   +  RP  R+ W+R+ PLPG
Sbjct: 836 IEKYTSIPSLRDLHKPTRPLKRVHWQRVDPLPG 868


>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
 Frame = -3

Query: 348 VCIMVG-YIIFGSMLFGMWENWDQ-LDGAYFCFISLSSIGFGDFVPG--ERVYTPRIETS 181
           +C   G YII   +L     +W Q L G     + + ++      PG    V  P+I  +
Sbjct: 89  ICFFSGVYIIAELLLVTAVPSWIQVLVGKILAGVGIGALSV--LSPGYQSEVAPPQIRGA 146

Query: 180 FIACSMYLMLGMALVAMCFNL 118
            +A       G ALVA C N+
Sbjct: 147 VVATYQIFSTGAALVAACINM 167


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 558 IPPNARDFQRRPDYFRSASMPQPWERREALPAQPR 454
           +PP  R   R+P  FRS S+  P  +  A P   R
Sbjct: 50  LPPPTRRLPRKPLPFRSTSLQPPSSQPPAPPTHQR 84


>SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit
           S18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
 Frame = +2

Query: 155 MRYMEHAMNDVSMRGV*TLSPGTKSPKPILLSDMKQKYAPSSWSQFSHIPNSI---EPNI 325
           ++Y+   +  V +R   + SP   +PK  L S ++    P ++S+ +  PN I      I
Sbjct: 43  IKYLMLNLTKVGLRRFWSQSPRRNAPKKELSSLLESTITPKAFSKRTEEPNPIMQGTDTI 102

Query: 326 IYPTIIHTQTL 358
             P  +H + L
Sbjct: 103 PMPFYLHAKCL 113


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +3

Query: 417  PSPS*RRGAPTSPAAVLGAPPASPRAEA 500
            P P+   G P  P    G PP  P +EA
Sbjct: 1170 PVPAPSSGIPPVPKPAAGVPPVPPPSEA 1197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,311,728
Number of Sequences: 5004
Number of extensions: 73067
Number of successful extensions: 237
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)