Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13d22
(752 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1156 - 30814037-30814190,30814277-30815166 44 2e-04
01_06_0369 - 28794283-28794427,28794865-28795874 37 0.015
07_01_0065 + 466416-467465 34 0.11
09_02_0327 - 7284829-7284889,7284946-7286126 31 0.98
03_05_0780 + 27646936-27647084,27647168-27647289,27649380-276494... 29 3.0
06_01_0191 + 1478267-1478929,1480579-1480789,1482625-1482925,148... 29 4.0
06_02_0007 - 10533689-10534565,10535054-10535946 29 5.2
04_03_0776 - 19463473-19464252,19464354-19464849,19465460-19465911 29 5.2
09_02_0002 - 2860931-2861159,2861564-2861688,2861946-2862131,286... 28 6.9
01_06_0495 - 29779499-29781325 28 6.9
01_06_0004 + 25507739-25508206,25509346-25509477,25509910-255100... 28 6.9
12_02_1167 + 26647293-26648356,26648493-26648577,26649129-266491... 28 9.2
03_06_0721 - 35742380-35742736,35743206-35743398,35743497-357435... 28 9.2
03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130... 28 9.2
02_05_0429 - 28916583-28916882,28917286-28917408,28917484-289175... 28 9.2
>03_05_1156 - 30814037-30814190,30814277-30815166
Length = 347
Score = 43.6 bits (98), Expect = 2e-04
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Frame = -3
Query: 279 LDGAYFCFISLSSIGFGDFVPGERVYTPRIETSFIACSMYLMLGMALVAMCFN-----LM 115
LD YFC ++++++G+GD VP T +AC+ ++ +GMA+VA+ + L+
Sbjct: 98 LDALYFCVVTMTTVGYGDLVPNNDT------TKLLACA-FVFMGMAVVALFVSKVADYLV 150
Query: 114 QEQVIHYFAGLKRVLK 67
++Q + +F L LK
Sbjct: 151 EKQEVLFFKALHTNLK 166
>01_06_0369 - 28794283-28794427,28794865-28795874
Length = 384
Score = 37.1 bits (82), Expect = 0.015
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Frame = -3
Query: 360 ISVCVCIMVGYIIFGSMLFGMW--ENWDQLDGAYFCFISLSSIGFGDFVPGERVYTPRIE 187
+SV + I +G +++ + + G +DG YF ISL +IG+GD VP
Sbjct: 107 VSVILYISIGVLVYITNVEGFKGRSTLKLVDGLYFTIISLCTIGYGDIVPCTTF------ 160
Query: 186 TSFIACSMYLMLGMALVAMCFNLMQEQVI 100
T C ++L++G+ V + N + V+
Sbjct: 161 TKVFTC-LFLLIGVRFVDIVLNELLTNVL 188
>07_01_0065 + 466416-467465
Length = 349
Score = 34.3 bits (75), Expect = 0.11
Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Frame = -3
Query: 342 IMVGYIIFGSMLFGM-------WENWDQLDGAYFCFISLSSIGFGDFVPGERVYTPRIET 184
++V Y++ G++ F + LD YFC ++++++G+GD VP
Sbjct: 71 LLVAYLLLGTIAFYLAMDHMSGTRTTRALDALYFCVVTMTTVGYGDLVPASDA------A 124
Query: 183 SFIACSMYLMLGMALV 136
+AC+ ++ G+A+V
Sbjct: 125 KLLACA-FVFAGVAVV 139
>09_02_0327 - 7284829-7284889,7284946-7286126
Length = 413
Score = 31.1 bits (67), Expect = 0.98
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 276 DGAYFCFISLSSIGFGDFVP 217
D YFC ++L +IG+GD P
Sbjct: 192 DALYFCIVTLCTIGYGDITP 211
>03_05_0780 +
27646936-27647084,27647168-27647289,27649380-27649458,
27650346-27650427,27650483-27650600,27650695-27651050,
27651404-27652222,27652846-27653265,27653426-27653437
Length = 718
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 60 KPVSEPSSDQQSNVSLAPASN*STSRPGPCP 152
KPVS+PSS + P++ S SRP P P
Sbjct: 437 KPVSDPSSVLSRTGQMQPSATSSASRPRPPP 467
>06_01_0191 +
1478267-1478929,1480579-1480789,1482625-1482925,
1483217-1483612,1483993-1484070,1484166-1484373
Length = 618
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -3
Query: 531 RRPDYFRSASMPQPWERREALPAQPRGWSEPL 436
RR +R P P ERR L PRG+ PL
Sbjct: 111 RRRFAYRERHCPPPAERRRCLVPAPRGYRAPL 142
>06_02_0007 - 10533689-10534565,10535054-10535946
Length = 589
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = -3
Query: 501 MPQPWERREALPAQPRGWSEPLAFRTDSEGTSEFSYVTFD 382
+P+P E E P QP SEP A +D+ S SY+ FD
Sbjct: 549 VPRPVEI-ERPPKQPVSTSEPAAAPSDAAQKSSDSYLEFD 587
>04_03_0776 - 19463473-19464252,19464354-19464849,19465460-19465911
Length = 575
Score = 28.7 bits (61), Expect = 5.2
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Frame = -3
Query: 747 ELLARWFKCXYALVCHCRGCPGFTKRRAA------RFRQQLDISDAESIERPPHWKSGYL 586
ELLAR F ALV C GF+ A + ++LD+ + E +R P W S +
Sbjct: 118 ELLARSFPRFRALVLI--SCEGFSTDGLAAVASHCKLLRELDLQENEVEDRGPRWLSCFP 175
Query: 585 DSDCT 571
DS CT
Sbjct: 176 DS-CT 179
>09_02_0002 -
2860931-2861159,2861564-2861688,2861946-2862131,
2862307-2862450,2863542-2863684,2865551-2865800
Length = 358
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 334 WVYNIRLNAVRYVGELGPAGRRVLL 260
WV + R VR +G+ GPAG V L
Sbjct: 23 WVNDYRFRVVRRLGDAGPAGSFVFL 47
>01_06_0495 - 29779499-29781325
Length = 608
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 347 TQTLIGTVIV*ASKVT*LNSLVPSESVLKARGSDQPRGC 463
T L GT+I S++ L+ + S L RGSD P GC
Sbjct: 49 TPALCGTLISALSRLCSHQELLDAFSSLHRRGSDVPPGC 87
>01_06_0004 +
25507739-25508206,25509346-25509477,25509910-25510086,
25510175-25510219,25510305-25510512,25510766-25510825,
25510826-25511016,25511219-25511614
Length = 558
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = +3
Query: 417 PSPS*RRGAPTSPAAVLGAPPASPRAEALKHCG 515
PSPS AP SP+ V G+ ASP++ CG
Sbjct: 89 PSPSPSPNAPVSPSPVNGSGHASPKSPT-PSCG 120
>12_02_1167 +
26647293-26648356,26648493-26648577,26649129-26649191,
26649381-26649443,26649987-26650070,26650229-26650783
Length = 637
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +3
Query: 414 LPSPS*RRGAPTSPAAVLGAPPASPRAEALKHC 512
LP+P+ AP SPA V +PP SP AE++ C
Sbjct: 51 LPAPA---PAPPSPAPVPASPP-SPAAESVAPC 79
>03_06_0721 -
35742380-35742736,35743206-35743398,35743497-35743552,
35745951-35746727
Length = 460
Score = 27.9 bits (59), Expect = 9.2
Identities = 21/80 (26%), Positives = 34/80 (42%)
Frame = +1
Query: 13 YVGVLKTGVTSSLAARNPFQNPLQTSKVMYHLLLHQIKAHRDQGHAQHEVHGARNERRLN 192
Y+G+ +SL P L + + +L ++ A DQ R++ R N
Sbjct: 33 YLGLSFAFFLASLPGGTPAARHLASLQSRGRVLATRLLAAEDQLRQLRARR--RDDARAN 90
Query: 193 ARRVDPFAGHKVAEADTTER 252
AR + FAGH+ + D R
Sbjct: 91 ARAAEIFAGHRASWMDNERR 110
>03_01_0161 +
1307206-1307769,1307979-1308101,1308182-1308286,
1308688-1308867,1308988-1309050,1309151-1309345,
1309704-1309805,1309885-1309947,1310045-1310113,
1310215-1310270,1310587-1310755
Length = 562
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 48 SCSEKPVSEPSSDQQSNVSLAPASN*STSRPGPCPA 155
S S KP + P+S S ++ AP+S S++ P P P+
Sbjct: 4 SASSKPPT-PASTPSSRLAAAPSSRVSSAAPHPSPS 38
>02_05_0429 -
28916583-28916882,28917286-28917408,28917484-28917561,
28917889-28917950,28918260-28918347
Length = 216
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 523 RLLPQCFNASALGEAGGAPSTAAGLVGAPR 434
R LP C A + G+P A G+V APR
Sbjct: 168 RRLPDCAGACPCRASFGSPCGAGGVVSAPR 197
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,447,013
Number of Sequences: 37544
Number of extensions: 560432
Number of successful extensions: 2063
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2062
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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