Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13d21
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    29   0.56 
SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.56 
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi...    27   3.0  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    27   3.9  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    27   3.9  
SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   5.2  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    26   5.2  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    26   6.9  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    25   9.1  

>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +1

Query: 160 FDQYLLVYECKDDFXXXXXXXXXN*TTRQFYIFQLHCLKVDICLDFRA 303
           FDQYL+V +C             + T  Q +I   H +   +CL F A
Sbjct: 27  FDQYLIVGQCSGQVMVFDVSTDNHFTLIQTFIAHKHSVSSIVCLPFEA 74


>SPAC25A8.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 390

 Score = 29.5 bits (63), Expect = 0.56
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -1

Query: 406 GEDNDLFWRIHAAKLPI-VRYNKTLARYTSLPH 311
           G D DLF R++ A+LPI + Y+   +R +S P+
Sbjct: 354 GMDFDLFHRLYLARLPIPINYSSLRSRSSSKPY 386


>SPAC1002.16c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 484 FGGVSSMSVRHFEAVNGFANVYWGW 410
           FGG+ + +V H + V GFA   W W
Sbjct: 198 FGGLFAYAVLHMDGVGGFAG--WRW 220


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = -1

Query: 487 LFGGVSSMSVRHFEAVNGFANVYWGWGGEDNDLFWRIHAAKLPIVRYNKTLARYTSL 317
           LFGGVS       +  +   N        DND+F ++H +K  I +Y    + +  L
Sbjct: 812 LFGGVSDQQRNECDNYSNHYND--NSNDNDNDVFLKLHWSKSAIKKYETKASIFNEL 866


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = -1

Query: 487 LFGGVSSMSVRHFEAVNGFANVYWGWGGEDNDLFWRIHAAKLPIVRYNKTLARYTSL 317
           LFGGVS       +  +   N        DND+F ++H +K  I +Y    + +  L
Sbjct: 812 LFGGVSDQQRNECDNYSNHYND--NSNDNDNDVFLKLHWSKSAIKKYETKASIFNEL 866


>SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 351 LTIGSFAA*ILQNKSLSSPPHPQYTLAKPFTASKCLT 461
           L++GS       N S SS P P  TL   +T + C T
Sbjct: 12  LSLGSLTTAYGANASNSSVPTPDNTLVVSYTNTSCYT 48


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 342 LLYLTIGSFAA*ILQNKSLSSPPHPQYTL 428
           L YL +G F   I++ + L S   PQ+TL
Sbjct: 761 LWYLFLGYFIITIVEGRRLESEAEPQFTL 789


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
            Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = -1

Query: 247  IDGLSNLVYTVILVTENHLYTRILVDIDRMKNITDTF*INDNIAIFDC-VIDKHLSSNKI 71
            +DG S+  Y ++ + + + Y    V +D  + +T    +          ++D+ LSS+K 
Sbjct: 1078 MDGRSSQFYEILSLNKKNSYKDPQVIVDSFEGVTLNPVMRRKPGFESADIMDEDLSSHKF 1137

Query: 70   YDKL 59
            +DK+
Sbjct: 1138 FDKI 1141


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 624 QLLYLNISLKPTLKRHPRLKLWLPACSITNIRYSKF 731
           Q++   +SLKP     P+L  W P  +   I Y  F
Sbjct: 254 QIILQLVSLKPIALLLPKLPSWNPTNNAGEIEYKTF 289


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,534,827
Number of Sequences: 5004
Number of extensions: 81478
Number of successful extensions: 229
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)