Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13d21
(775 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1486 - 27472226-27472867,27472951-27473862 31 0.77
04_03_1034 - 21865633-21865811,21865838-21865860,21866345-218664... 31 1.0
03_05_0349 + 23356871-23356907,23356995-23357063,23357236-233574... 30 2.3
08_02_1353 + 26335306-26335448,26336025-26336106,26336322-263364... 29 3.1
11_04_0147 - 14095039-14095937,14096914-14097379 29 5.4
05_05_0327 + 24126075-24126453,24128037-24128431,24129009-24129656 29 5.4
08_02_0987 + 23334208-23334297,23334422-23335360,23335449-23335730 28 7.2
03_02_0465 - 8688454-8689899 28 7.2
01_07_0012 + 40446271-40446609,40447378-40447479,40447565-40447741 28 9.5
>08_02_1486 - 27472226-27472867,27472951-27473862
Length = 517
Score = 31.5 bits (68), Expect = 0.77
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 624 QLLYLNISLKPTLKRHPRLKLWLPAC 701
+L YLN+ +K TL+ HP L L +P C
Sbjct: 356 KLHYLNLVVKETLRLHPALPLMVPHC 381
>04_03_1034 -
21865633-21865811,21865838-21865860,21866345-21866433,
21872484-21872894,21872968-21873284,21873389-21873467,
21873539-21873903,21874484-21874656,21874824-21874913,
21875797-21875862,21876615-21876661
Length = 612
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 289 NRYRLLSNGAERCKIDGLSNLVYTVILVTENH 194
NR L CK+ G SNL Y LV+E+H
Sbjct: 72 NRVNLYRERVWTCKVSGKSNLTYEEALVSEHH 103
>03_05_0349 +
23356871-23356907,23356995-23357063,23357236-23357424,
23358148-23358249,23358451-23358582,23359499-23359638,
23360169-23360252,23360608-23360748,23361815-23361916,
23362239-23362409,23362452-23362571
Length = 428
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = -3
Query: 422 VLGMGRGRQRFVLEDSRCKASYCEIQQDFGTLHVASAH 309
+L MGRGR R +ED R + E + G LH+A++H
Sbjct: 40 ILDMGRGRLRKAVEDVRVEGVPGE--EGTGVLHMAASH 75
>08_02_1353 +
26335306-26335448,26336025-26336106,26336322-26336451,
26336486-26336548,26336549-26336691,26336827-26336913,
26337014-26337088
Length = 240
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -1
Query: 565 TCPSFPRHMCGTVVQKENLPYYKYHTLFGGVSSMSVRHFE-AVNGFANVYWGWGGE 401
+CP+ + + T+ K PYY ++ L G S ++ +E + N++ + G+
Sbjct: 86 SCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEVAAHQYERMITTCENIFSSFAGK 141
>11_04_0147 - 14095039-14095937,14096914-14097379
Length = 454
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = +2
Query: 380 PPKQIVVFPSPSPVHIGETIHCLEMSHAHRGYSTEKRVVFVIWQVLLLHDSAAHMPRKRW 559
P ++V+FP P P H H + + RG+S + V+ L D AAH P R+
Sbjct: 4 PCGRVVLFPMPYPGHTIPMFHLAAVLRS-RGFS-----ITVLHTELRAPDPAAHPPEYRF 57
Query: 560 TCV 568
V
Sbjct: 58 VAV 60
>05_05_0327 + 24126075-24126453,24128037-24128431,24129009-24129656
Length = 473
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 627 LLYLNISLKPTLKRHPRLKLWLPACSITNIRYSKFCLIK 743
L YLN +K +L+ HP L LP + TN++ + + K
Sbjct: 311 LPYLNAVVKESLRLHPPTPLMLPHKASTNVKIGGYNIPK 349
>08_02_0987 + 23334208-23334297,23334422-23335360,23335449-23335730
Length = 436
Score = 28.3 bits (60), Expect = 7.2
Identities = 22/75 (29%), Positives = 39/75 (52%)
Frame = +2
Query: 470 GYSTEKRVVFVIWQVLLLHDSAAHMPRKRWTCVQYAVIKRYQVYIVEYHTLPIVIFEYLF 649
G+ EK V FV HD+ + +K W V++ Y YI+ + +P + ++++F
Sbjct: 298 GWLPEKAVTFVD-----NHDTGS--TQKLWPFPSDKVMQGY-AYILTHPGVPCIFYDHMF 349
Query: 650 EANVKEASSIEALVA 694
+ N+K+ I AL A
Sbjct: 350 DWNLKQ--EITALAA 362
>03_02_0465 - 8688454-8689899
Length = 481
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +3
Query: 543 CLGKDGHVYSMRSSRGIRSTSWNTTHCQLLYLNISLKPTLKRHPRLK 683
CLGKD VY RG + HC + +S K L+ RL+
Sbjct: 349 CLGKDPWVYMSSGPRGSGGGHGSVLHCYKSQVFVSRKDGLEVWSRLE 395
>01_07_0012 + 40446271-40446609,40447378-40447479,40447565-40447741
Length = 205
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -1
Query: 406 GEDNDLFWRIHAAKLPIVRYNKTLARYTSLPHIKQHENPNRYR 278
G+D+ LF I + +Y + + P+ KQ ENPN YR
Sbjct: 123 GKDHTLFSLIDGL-VKFEKYGPDKKKVSVYPYEKQPENPNSYR 164
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,418,330
Number of Sequences: 37544
Number of extensions: 511243
Number of successful extensions: 1445
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1444
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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