Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13d21
(775 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY533306-1|AAS21308.1| 383|Caenorhabditis elegans BRE-4 protein. 190 1e-48
AY130767-1|AAM95168.1| 383|Caenorhabditis elegans UDPGalNAc:Glc... 190 1e-48
AC025727-7|AAG23384.1| 383|Caenorhabditis elegans Bt (bacillus ... 190 1e-48
Z66521-7|CAA91401.2| 387|Caenorhabditis elegans Hypothetical pr... 150 1e-36
X98132-1|CAA66831.1| 387|Caenorhabditis elegans N-acetyllactosa... 150 1e-36
Z29095-5|CAA82350.1| 289|Caenorhabditis elegans Hypothetical pr... 88 6e-18
AJ005867-1|CAA06744.1| 289|Caenorhabditis elegans Sqv-3 protein... 88 6e-18
Z68227-6|CAA92512.1| 410|Caenorhabditis elegans Hypothetical pr... 32 0.40
Z81131-6|CAE17977.2| 734|Caenorhabditis elegans Hypothetical pr... 31 0.69
Z81131-5|CAB03422.2| 608|Caenorhabditis elegans Hypothetical pr... 31 0.69
AY241925-2|AAO85273.1| 734|Caenorhabditis elegans chondroitin d... 31 0.69
AY241925-1|AAO85274.1| 736|Caenorhabditis elegans chondroitin d... 31 0.69
AF045635-1|AAU87830.1| 480|Caenorhabditis elegans Nuclear hormo... 31 0.69
AB088398-1|BAC76781.1| 715|Caenorhabditis elegans chondroitin s... 31 0.69
AB088397-1|BAC76780.1| 726|Caenorhabditis elegans chondroitin s... 31 0.69
Z98866-17|CAB11566.3| 534|Caenorhabditis elegans Hypothetical p... 30 1.6
Z79695-2|CAB01971.2| 1008|Caenorhabditis elegans Hypothetical pr... 28 6.4
AL110487-11|CAC42369.1| 624|Caenorhabditis elegans Hypothetical... 28 6.4
AL110487-10|CAC42368.1| 623|Caenorhabditis elegans Hypothetical... 28 6.4
AL110487-9|CAB54435.1| 626|Caenorhabditis elegans Hypothetical ... 28 6.4
Z71181-9|CAD44140.1| 960|Caenorhabditis elegans Hypothetical pr... 28 8.5
Z71178-15|CAD44087.1| 960|Caenorhabditis elegans Hypothetical p... 28 8.5
>AY533306-1|AAS21308.1| 383|Caenorhabditis elegans BRE-4 protein.
Length = 383
Score = 190 bits (463), Expect = 1e-48
Identities = 90/206 (43%), Positives = 125/206 (60%), Gaps = 3/206 (1%)
Frame = -1
Query: 775 LAVFVFKIHPFLMRQNLEYRIFVIEQAGNQSFNRGCLFNVGFKEIFKYNNWQCVVFHDVD 596
L + + +H L +Q L+Y IF++EQ NQ+FNRG L NVG+ + WQC +FHDVD
Sbjct: 163 LRIMLHNLHSLLAKQQLDYAIFIVEQVANQTFNRGKLMNVGYDVASRLYPWQCFIFHDVD 222
Query: 595 LIPLDDRILYTCPSFPRHMCGTVVQKENLPYYKYHTLFGGVSSMSVRHFEAVNGFANVYW 416
L+P DDR LYTCP PRHM + K N Y +FGG+S+++ H + +NGF+N +W
Sbjct: 223 LLPEDDRNLYTCPIQPRHM-SVAIDKFNYK-LPYSAIFGGISALTKDHLKKINGFSNDFW 280
Query: 415 GWGGEDNDLFWRIHAAKLPIVRYNKTLARYTSLPHIKQHENP---NRYRLLSNGAERCKI 245
GWGGED+DL R A L + RY +ARY + H + NP RY+++ R
Sbjct: 281 GWGGEDDDLATRTSMAGLKVSRYPTQIARYKMIKHSTEATNPVNKCRYKIMGQTKRRWTR 340
Query: 244 DGLSNLVYTVILVTENHLYTRILVDI 167
DGLSNL Y ++ + LYTR +VD+
Sbjct: 341 DGLSNLKYKLVNLELKPLYTRAVVDL 366
>AY130767-1|AAM95168.1| 383|Caenorhabditis elegans
UDPGalNAc:GlcNAc{beta}-R
{beta}1,4-N-acetylgalactosaminyltransferase protein.
Length = 383
Score = 190 bits (463), Expect = 1e-48
Identities = 90/206 (43%), Positives = 125/206 (60%), Gaps = 3/206 (1%)
Frame = -1
Query: 775 LAVFVFKIHPFLMRQNLEYRIFVIEQAGNQSFNRGCLFNVGFKEIFKYNNWQCVVFHDVD 596
L + + +H L +Q L+Y IF++EQ NQ+FNRG L NVG+ + WQC +FHDVD
Sbjct: 163 LRIMLHNLHSLLAKQQLDYAIFIVEQVANQTFNRGKLMNVGYDVASRLYPWQCFIFHDVD 222
Query: 595 LIPLDDRILYTCPSFPRHMCGTVVQKENLPYYKYHTLFGGVSSMSVRHFEAVNGFANVYW 416
L+P DDR LYTCP PRHM + K N Y +FGG+S+++ H + +NGF+N +W
Sbjct: 223 LLPEDDRNLYTCPIQPRHM-SVAIDKFNYK-LPYSAIFGGISALTKDHLKKINGFSNDFW 280
Query: 415 GWGGEDNDLFWRIHAAKLPIVRYNKTLARYTSLPHIKQHENP---NRYRLLSNGAERCKI 245
GWGGED+DL R A L + RY +ARY + H + NP RY+++ R
Sbjct: 281 GWGGEDDDLATRTSMAGLKVSRYPTQIARYKMIKHSTEATNPVNKCRYKIMGQTKRRWTR 340
Query: 244 DGLSNLVYTVILVTENHLYTRILVDI 167
DGLSNL Y ++ + LYTR +VD+
Sbjct: 341 DGLSNLKYKLVNLELKPLYTRAVVDL 366
>AC025727-7|AAG23384.1| 383|Caenorhabditis elegans Bt (bacillus
thuringiensis) toxinresistant protein 4 protein.
Length = 383
Score = 190 bits (463), Expect = 1e-48
Identities = 90/206 (43%), Positives = 125/206 (60%), Gaps = 3/206 (1%)
Frame = -1
Query: 775 LAVFVFKIHPFLMRQNLEYRIFVIEQAGNQSFNRGCLFNVGFKEIFKYNNWQCVVFHDVD 596
L + + +H L +Q L+Y IF++EQ NQ+FNRG L NVG+ + WQC +FHDVD
Sbjct: 163 LRIMLHNLHSLLAKQQLDYAIFIVEQVANQTFNRGKLMNVGYDVASRLYPWQCFIFHDVD 222
Query: 595 LIPLDDRILYTCPSFPRHMCGTVVQKENLPYYKYHTLFGGVSSMSVRHFEAVNGFANVYW 416
L+P DDR LYTCP PRHM + K N Y +FGG+S+++ H + +NGF+N +W
Sbjct: 223 LLPEDDRNLYTCPIQPRHM-SVAIDKFNYK-LPYSAIFGGISALTKDHLKKINGFSNDFW 280
Query: 415 GWGGEDNDLFWRIHAAKLPIVRYNKTLARYTSLPHIKQHENP---NRYRLLSNGAERCKI 245
GWGGED+DL R A L + RY +ARY + H + NP RY+++ R
Sbjct: 281 GWGGEDDDLATRTSMAGLKVSRYPTQIARYKMIKHSTEATNPVNKCRYKIMGQTKRRWTR 340
Query: 244 DGLSNLVYTVILVTENHLYTRILVDI 167
DGLSNL Y ++ + LYTR +VD+
Sbjct: 341 DGLSNLKYKLVNLELKPLYTRAVVDL 366
>Z66521-7|CAA91401.2| 387|Caenorhabditis elegans Hypothetical
protein W02B12.11 protein.
Length = 387
Score = 150 bits (363), Expect = 1e-36
Identities = 84/199 (42%), Positives = 113/199 (56%), Gaps = 5/199 (2%)
Frame = -1
Query: 748 PFLMRQNLEYRIFVIEQAGNQSFNRGCLFNVGFKEIFKYN-NWQCVVFHDVDLIPLDDRI 572
P L RQ L++R V EQ GN FN+G + N F IF + CVVFHDVD+ P DDR
Sbjct: 183 PILQRQRLDFRFIVTEQYGNDLFNKGRIMNAAF--IFAESLGVDCVVFHDVDMFPQDDRN 240
Query: 571 LYTCPSFPRHMCGTVVQKENLPYYK-YHTLFGGVSSMSVRHFEAVNGFANVYWGWGGEDN 395
Y+CP PRH+ G V NL Y Y + GGV ++S+ + AVNG++N +W WGGED+
Sbjct: 241 PYSCPPGPRHL-GAFVS--NLGYQLWYKEIVGGVLAVSMADYRAVNGYSNQFWAWGGEDD 297
Query: 394 DLFWRIHAAKLPIVRYNKTLARYTSLPHIKQHENPNR--YRLLSNGAERCKIDGLSNL-V 224
D+ RI + I R N RY+ L H+K+ + Y+LL N A R DGL+
Sbjct: 298 DMGQRILSLNYTIERPNPETGRYSMLKHVKRKRTAPKLIYKLLGNSANRVAYDGLNETDK 357
Query: 223 YTVILVTENHLYTRILVDI 167
+T+ VT LY + VD+
Sbjct: 358 WTIRKVTTRPLYYHLYVDV 376
>X98132-1|CAA66831.1| 387|Caenorhabditis elegans
N-acetyllactosamine synthase protein.
Length = 387
Score = 150 bits (363), Expect = 1e-36
Identities = 84/199 (42%), Positives = 113/199 (56%), Gaps = 5/199 (2%)
Frame = -1
Query: 748 PFLMRQNLEYRIFVIEQAGNQSFNRGCLFNVGFKEIFKYN-NWQCVVFHDVDLIPLDDRI 572
P L RQ L++R V EQ GN FN+G + N F IF + CVVFHDVD+ P DDR
Sbjct: 183 PILQRQRLDFRFIVTEQYGNDLFNKGRIMNAAF--IFAESLGVDCVVFHDVDMFPQDDRN 240
Query: 571 LYTCPSFPRHMCGTVVQKENLPYYK-YHTLFGGVSSMSVRHFEAVNGFANVYWGWGGEDN 395
Y+CP PRH+ G V NL Y Y + GGV ++S+ + AVNG++N +W WGGED+
Sbjct: 241 PYSCPPGPRHL-GAFVS--NLGYQLWYKEIVGGVLAVSMADYRAVNGYSNQFWAWGGEDD 297
Query: 394 DLFWRIHAAKLPIVRYNKTLARYTSLPHIKQHENPNR--YRLLSNGAERCKIDGLSNL-V 224
D+ RI + I R N RY+ L H+K+ + Y+LL N A R DGL+
Sbjct: 298 DMGQRILSLNYTIERPNPETGRYSMLKHVKRKRTAPKLIYKLLGNSANRVAYDGLNETDK 357
Query: 223 YTVILVTENHLYTRILVDI 167
+T+ VT LY + VD+
Sbjct: 358 WTIRKVTTRPLYYHLYVDV 376
>Z29095-5|CAA82350.1| 289|Caenorhabditis elegans Hypothetical
protein R10E11.4 protein.
Length = 289
Score = 88.2 bits (209), Expect = 6e-18
Identities = 43/132 (32%), Positives = 71/132 (53%)
Frame = -1
Query: 745 FLMRQNLEYRIFVIEQAGNQSFNRGCLFNVGFKEIFKYNNWQCVVFHDVDLIPLDDRILY 566
FL QN+ + I +I Q FNR L NVG+ E + +V +DVDL+P++ + Y
Sbjct: 76 FLHNQNVSHHILIINQTDPLRFNRASLINVGWNEADRLG-CDYMVMNDVDLLPVNPEVPY 134
Query: 565 TCPSFPRHMCGTVVQKENLPYYKYHTLFGGVSSMSVRHFEAVNGFANVYWGWGGEDNDLF 386
P + + + P Y Y GG+ ++++ ++ +NG +N YWGWG ED++ +
Sbjct: 135 DFPGIG--VIRHITSPQYHPKYHYEKFIGGILMLTLKDYKKLNGMSNKYWGWGLEDDEFY 192
Query: 385 WRIHAAKLPIVR 350
RI +KL + R
Sbjct: 193 LRIIDSKLNLTR 204
>AJ005867-1|CAA06744.1| 289|Caenorhabditis elegans Sqv-3 protein
protein.
Length = 289
Score = 88.2 bits (209), Expect = 6e-18
Identities = 43/132 (32%), Positives = 71/132 (53%)
Frame = -1
Query: 745 FLMRQNLEYRIFVIEQAGNQSFNRGCLFNVGFKEIFKYNNWQCVVFHDVDLIPLDDRILY 566
FL QN+ + I +I Q FNR L NVG+ E + +V +DVDL+P++ + Y
Sbjct: 76 FLHNQNVSHHILIINQTDPLRFNRASLINVGWNEADRLG-CDYMVMNDVDLLPVNPEVPY 134
Query: 565 TCPSFPRHMCGTVVQKENLPYYKYHTLFGGVSSMSVRHFEAVNGFANVYWGWGGEDNDLF 386
P + + + P Y Y GG+ ++++ ++ +NG +N YWGWG ED++ +
Sbjct: 135 DFPGIG--VIRHITSPQYHPKYHYEKFIGGILMLTLKDYKKLNGMSNKYWGWGLEDDEFY 192
Query: 385 WRIHAAKLPIVR 350
RI +KL + R
Sbjct: 193 LRIIDSKLNLTR 204
>Z68227-6|CAA92512.1| 410|Caenorhabditis elegans Hypothetical
protein F49C12.8 protein.
Length = 410
Score = 32.3 bits (70), Expect = 0.40
Identities = 13/44 (29%), Positives = 27/44 (61%)
Frame = -1
Query: 283 YRLLSNGAERCKIDGLSNLVYTVILVTENHLYTRILVDIDRMKN 152
+RL++ G +C+ID ++ ++ ++NHLY ++ D D + N
Sbjct: 356 HRLIATGQLQCRIDAVNGVIEVNHRDSKNHLYKAVIKDGDILLN 399
>Z81131-6|CAE17977.2| 734|Caenorhabditis elegans Hypothetical
protein T24D1.1b protein.
Length = 734
Score = 31.5 bits (68), Expect = 0.69
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Frame = -1
Query: 496 YHTLFG-GVSSMSVRHFEAVNGFANVYWGWGGEDNDLFWR-IHAAKLPIVRYNKTLARYT 323
Y FG G+++M V GF GWG ED DLF + I +L ++R + +
Sbjct: 635 YFRHFGYGLAAMYKADLMDVGGFDTKIEGWGKEDVDLFEKAIKNGRLRVIRVPEPGLVHI 694
Query: 322 SLPHIKQHENPNRYRLLSNGAERCKIDGLSNLVYTVILVT 203
P P + + +G++ + + LV + T
Sbjct: 695 YHPIHCDENMPTAQKDMCHGSKAASLASIDTLVEQIAQYT 734
>Z81131-5|CAB03422.2| 608|Caenorhabditis elegans Hypothetical
protein T24D1.1a protein.
Length = 608
Score = 31.5 bits (68), Expect = 0.69
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Frame = -1
Query: 496 YHTLFG-GVSSMSVRHFEAVNGFANVYWGWGGEDNDLFWR-IHAAKLPIVRYNKTLARYT 323
Y FG G+++M V GF GWG ED DLF + I +L ++R + +
Sbjct: 509 YFRHFGYGLAAMYKADLMDVGGFDTKIEGWGKEDVDLFEKAIKNGRLRVIRVPEPGLVHI 568
Query: 322 SLPHIKQHENPNRYRLLSNGAERCKIDGLSNLVYTVILVT 203
P P + + +G++ + + LV + T
Sbjct: 569 YHPIHCDENMPTAQKDMCHGSKAASLASIDTLVEQIAQYT 608
>AY241925-2|AAO85273.1| 734|Caenorhabditis elegans chondroitin
disaccharide polymerase protein.
Length = 734
Score = 31.5 bits (68), Expect = 0.69
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Frame = -1
Query: 496 YHTLFG-GVSSMSVRHFEAVNGFANVYWGWGGEDNDLFWR-IHAAKLPIVRYNKTLARYT 323
Y FG G+++M V GF GWG ED DLF + I +L ++R + +
Sbjct: 635 YFRHFGYGLAAMYKADLMDVGGFDTKIEGWGKEDVDLFEKAIKNGRLRVIRVPEPGLVHI 694
Query: 322 SLPHIKQHENPNRYRLLSNGAERCKIDGLSNLVYTVILVT 203
P P + + +G++ + + LV + T
Sbjct: 695 YHPIHCDENMPTAQKDMCHGSKAASLASIDTLVEQIAQYT 734
>AY241925-1|AAO85274.1| 736|Caenorhabditis elegans chondroitin
disaccharide polymerase protein.
Length = 736
Score = 31.5 bits (68), Expect = 0.69
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Frame = -1
Query: 496 YHTLFG-GVSSMSVRHFEAVNGFANVYWGWGGEDNDLFWR-IHAAKLPIVRYNKTLARYT 323
Y FG G+++M V GF GWG ED DLF + I +L ++R + +
Sbjct: 637 YFRHFGYGLAAMYKADLMDVGGFDTKIEGWGKEDVDLFEKAIKNGRLRVIRVPEPGLVHI 696
Query: 322 SLPHIKQHENPNRYRLLSNGAERCKIDGLSNLVYTVILVT 203
P P + + +G++ + + LV + T
Sbjct: 697 YHPIHCDENMPTAQKDMCHGSKAASLASIDTLVEQIAQYT 736
>AF045635-1|AAU87830.1| 480|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 76 protein.
Length = 480
Score = 31.5 bits (68), Expect = 0.69
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = +1
Query: 403 PLPIPSTHWRNHSLPRNVSRSSRI-LHRKACGICNMAGSPSARQCRTYASEKMDMCTVCG 579
P PS+ S+P + SS + K ++ PS C + ASEK + C VC
Sbjct: 25 PFETPSSSTTTPSVPPSFPHSSNPNAYMKPSPPSAISSPPSTSSCSS-ASEKKE-CAVCK 82
Query: 580 HQEVSGLHRGIPHIANC 630
+ SG H G A C
Sbjct: 83 NPNSSGYHFGCIACAAC 99
>AB088398-1|BAC76781.1| 715|Caenorhabditis elegans chondroitin
synthase-S protein.
Length = 715
Score = 31.5 bits (68), Expect = 0.69
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Frame = -1
Query: 496 YHTLFG-GVSSMSVRHFEAVNGFANVYWGWGGEDNDLFWR-IHAAKLPIVRYNKTLARYT 323
Y FG G+++M V GF GWG ED DLF + I +L ++R + +
Sbjct: 616 YFRHFGYGLAAMYKADLMDVGGFDTKIEGWGKEDVDLFEKAIKNGRLRVIRVPEPGLVHI 675
Query: 322 SLPHIKQHENPNRYRLLSNGAERCKIDGLSNLVYTVILVT 203
P P + + +G++ + + LV + T
Sbjct: 676 YHPIHCDENMPTAQKDMCHGSKAASLASIDTLVEQIAQYT 715
>AB088397-1|BAC76780.1| 726|Caenorhabditis elegans chondroitin
synthase protein.
Length = 726
Score = 31.5 bits (68), Expect = 0.69
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Frame = -1
Query: 496 YHTLFG-GVSSMSVRHFEAVNGFANVYWGWGGEDNDLFWR-IHAAKLPIVRYNKTLARYT 323
Y FG G+++M V GF GWG ED DLF + I +L ++R + +
Sbjct: 627 YFRHFGYGLAAMYKADLMDVGGFDTKIEGWGKEDVDLFEKAIKNGRLRVIRVPEPGLVHI 686
Query: 322 SLPHIKQHENPNRYRLLSNGAERCKIDGLSNLVYTVILVT 203
P P + + +G++ + + LV + T
Sbjct: 687 YHPIHCDENMPTAQKDMCHGSKAASLASIDTLVEQIAQYT 726
>Z98866-17|CAB11566.3| 534|Caenorhabditis elegans Hypothetical
protein Y49E10.20 protein.
Length = 534
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +3
Query: 552 KDGHVYSMRSSRGIRSTSWNTTHCQLLYLNIS--LKPTLKRHPRLKLWLP-ACSITNIRY 722
K GH+Y+ + + +W+T + +++ P LKR RL +++P C + Y
Sbjct: 251 KIGHLYTWNNMTEMPEGTWDTKYARMINGTDGQLFSPMLKREDRLTIFVPQICRSIQMEY 310
Query: 723 SK 728
+K
Sbjct: 311 TK 312
>Z79695-2|CAB01971.2| 1008|Caenorhabditis elegans Hypothetical
protein F27D4.6 protein.
Length = 1008
Score = 28.3 bits (60), Expect = 6.4
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +1
Query: 547 SEKMDMCTVCGHQEVSGLHRGIPHI 621
+E+ ++C VC +Q S +HR + H+
Sbjct: 155 AERPNICNVCNNQAPSTIHRYVKHV 179
>AL110487-11|CAC42369.1| 624|Caenorhabditis elegans Hypothetical
protein Y39E4B.12c protein.
Length = 624
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = -1
Query: 490 TLFGGVSSMSVRHFEAVNGFANVYWGWGGEDNDLFWRI 377
T+ GG+ S+ ++FE + + + WGGE+ +L ++I
Sbjct: 350 TMAGGLFSIDKKYFEKLGTYDPGFDIWGGENLELSFKI 387
>AL110487-10|CAC42368.1| 623|Caenorhabditis elegans Hypothetical
protein Y39E4B.12b protein.
Length = 623
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = -1
Query: 490 TLFGGVSSMSVRHFEAVNGFANVYWGWGGEDNDLFWRI 377
T+ GG+ S+ ++FE + + + WGGE+ +L ++I
Sbjct: 350 TMAGGLFSIDKKYFEKLGTYDPGFDIWGGENLELSFKI 387
>AL110487-9|CAB54435.1| 626|Caenorhabditis elegans Hypothetical
protein Y39E4B.12a protein.
Length = 626
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = -1
Query: 490 TLFGGVSSMSVRHFEAVNGFANVYWGWGGEDNDLFWRI 377
T+ GG+ S+ ++FE + + + WGGE+ +L ++I
Sbjct: 350 TMAGGLFSIDKKYFEKLGTYDPGFDIWGGENLELSFKI 387
>Z71181-9|CAD44140.1| 960|Caenorhabditis elegans Hypothetical
protein B0024.14b protein.
Length = 960
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/32 (31%), Positives = 13/32 (40%)
Frame = +1
Query: 490 CGICNMAGSPSARQCRTYASEKMDMCTVCGHQ 585
CG C+ P C ++ D C VC Q
Sbjct: 27 CGTCDKDSCPDVSGCEQLKKDQCDCCEVCIRQ 58
>Z71178-15|CAD44087.1| 960|Caenorhabditis elegans Hypothetical
protein B0024.14b protein.
Length = 960
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/32 (31%), Positives = 13/32 (40%)
Frame = +1
Query: 490 CGICNMAGSPSARQCRTYASEKMDMCTVCGHQ 585
CG C+ P C ++ D C VC Q
Sbjct: 27 CGTCDKDSCPDVSGCEQLKKDQCDCCEVCIRQ 58
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,707,890
Number of Sequences: 27780
Number of extensions: 461207
Number of successful extensions: 1357
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1341
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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