Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13d21
         (775 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   1.0  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         23   2.4  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   2.4  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   5.5  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   5.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   5.5  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   7.3  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.6  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   9.6  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 256 FQLHCLKVDICLDFRAA*CAEATCNVPKSC 345
           ++ HC  +  C DF A  C E TC  P  C
Sbjct: 739 YEAHCFALCHCCDFDACDC-EMTC--PAGC 765


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 302 LLDVRKRRVTCQSLVVSHNRKLCSVN 379
           LL +R RRVTC   V+S   K  S+N
Sbjct: 54  LLPLRHRRVTCD--VLSWQSKWLSIN 77


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = +1

Query: 484 KACGICNMAGSPSARQCRTYASEKMDMCTVCG 579
           KACG             RT+  EK   C +CG
Sbjct: 207 KACGKGFTCSKQLKVHTRTHTGEKPYTCDICG 238



 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
 Frame = +1

Query: 490 CGICNMAGSPSAR---QCRTYASEKMDMCTVCG 579
           C +C+     S +     RT+  EK  +C  CG
Sbjct: 178 CTVCSKTFIQSGQLVIHMRTHTGEKPYVCKACG 210


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +2

Query: 611 YHTLPIVIFEYLFEANVKEASSIEALVAGLFYNKYTVLQILPHQEGVN 754
           + +LP   ++YL   N  E   ++A+ +G   ++Y     +   EG+N
Sbjct: 315 FSSLPYYKYKYLNVINALEMRLMDAIDSGYLIDEYGKKIDIYTPEGLN 362


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +2

Query: 611 YHTLPIVIFEYLFEANVKEASSIEALVAGLFYNKYTVLQILPHQEGVN 754
           + +LP   ++YL   N  E   ++A+ +G   ++Y     +   EG+N
Sbjct: 315 FSSLPYYKYKYLNVINALEMRLMDAIDSGYLIDEYGKKIDIYTPEGLN 362


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +1

Query: 310 CAEATCNVPKSCCISQ*EAL 369
           C   TCN    CC +Q + L
Sbjct: 435 CECKTCNSKTKCCFAQDDGL 454


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +2

Query: 338 SLVVSHNRKLCSVNPPKQIVVFPSPSPVHIGE 433
           S+  S  RK+ +  PPK        SP H+ +
Sbjct: 236 SMAKSFVRKVHATKPPKPQTKTKPTSPYHVSD 267


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/39 (23%), Positives = 20/39 (51%)
 Frame = -1

Query: 181 ILVDIDRMKNITDTF*INDNIAIFDCVIDKHLSSNKIYD 65
           +L  +DR+ + T+   + +    F  + DK+    K+Y+
Sbjct: 375 VLAIVDRLMDETNQLTLQETADAFKDLQDKYYEEYKMYE 413


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 208 VTENHLYTRILVDI 167
           V E+ LYT I+VDI
Sbjct: 302 VKEDSLYTNIVVDI 315


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 244,438
Number of Sequences: 438
Number of extensions: 6308
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)