Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13d18
(162 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical pr... 45 6e-06
Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical pr... 45 6e-06
Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical p... 45 8e-06
Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical pr... 45 8e-06
X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin pr... 43 3e-05
U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory ... 43 3e-05
Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical p... 29 0.34
Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical p... 29 0.34
Z92815-5|CAH10781.1| 313|Caenorhabditis elegans Hypothetical pr... 25 9.6
Z83116-6|CAB05565.2| 302|Caenorhabditis elegans Hypothetical pr... 25 9.6
Z81547-6|CAB04462.2| 313|Caenorhabditis elegans Hypothetical pr... 25 9.6
Z81132-11|CAB03426.2| 302|Caenorhabditis elegans Hypothetical p... 25 9.6
>Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical
protein C54C6.2 protein.
Length = 444
Score = 45.2 bits (102), Expect = 6e-06
Identities = 20/21 (95%), Positives = 21/21 (100%)
Frame = -2
Query: 161 EAESNMNDLVSEYQQYQDATA 99
EAESNMNDLVSEYQQYQ+ATA
Sbjct: 410 EAESNMNDLVSEYQQYQEATA 430
>Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical
protein B0272.1 protein.
Length = 444
Score = 45.2 bits (102), Expect = 6e-06
Identities = 20/21 (95%), Positives = 21/21 (100%)
Frame = -2
Query: 161 EAESNMNDLVSEYQQYQDATA 99
EAESNMNDLVSEYQQYQ+ATA
Sbjct: 410 EAESNMNDLVSEYQQYQEATA 430
>Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical
protein K01G5.7 protein.
Length = 449
Score = 44.8 bits (101), Expect = 8e-06
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = -2
Query: 161 EAESNMNDLVSEYQQYQDATA 99
EAESNMNDL+SEYQQYQ+ATA
Sbjct: 410 EAESNMNDLISEYQQYQEATA 430
>Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical
protein C36E8.5 protein.
Length = 450
Score = 44.8 bits (101), Expect = 8e-06
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = -2
Query: 161 EAESNMNDLVSEYQQYQDATA 99
EAESNMNDL+SEYQQYQ+ATA
Sbjct: 410 EAESNMNDLISEYQQYQEATA 430
>X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin
protein.
Length = 441
Score = 43.2 bits (97), Expect = 3e-05
Identities = 19/21 (90%), Positives = 20/21 (95%)
Frame = -2
Query: 161 EAESNMNDLVSEYQQYQDATA 99
EAESNMNDLVSEYQQYQ+A A
Sbjct: 410 EAESNMNDLVSEYQQYQEAAA 430
>U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory
abnormality protein7 protein.
Length = 441
Score = 43.2 bits (97), Expect = 3e-05
Identities = 19/21 (90%), Positives = 20/21 (95%)
Frame = -2
Query: 161 EAESNMNDLVSEYQQYQDATA 99
EAESNMNDLVSEYQQYQ+A A
Sbjct: 410 EAESNMNDLVSEYQQYQEAAA 430
>Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 29.5 bits (63), Expect = 0.34
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 161 EAESNMNDLVSEYQQYQ 111
+AE+ +NDL+SE+QQY+
Sbjct: 405 DAENKVNDLISEFQQYE 421
>Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 29.5 bits (63), Expect = 0.34
Identities = 10/17 (58%), Positives = 16/17 (94%)
Frame = -2
Query: 161 EAESNMNDLVSEYQQYQ 111
+AE+ +NDL+SE+QQY+
Sbjct: 405 DAENKVNDLISEFQQYE 421
>Z92815-5|CAH10781.1| 313|Caenorhabditis elegans Hypothetical
protein F53F8.2 protein.
Length = 313
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 24 PTSYKH*TGQHSLFLYLFIKFPFIISRGVLIL 119
PT YK + + ++ + FP I S +LI+
Sbjct: 106 PTRYKMLEHERYKYFFILLAFPIIYSSALLIM 137
>Z83116-6|CAB05565.2| 302|Caenorhabditis elegans Hypothetical
protein M01B2.7 protein.
Length = 302
Score = 24.6 bits (51), Expect = 9.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 24 PTSYKH*TGQHSLFLYLFIKFPFIISRGVLIL 119
PT YK + +L+L + FP I S +LI+
Sbjct: 106 PTRYKLLENERYKYLFLQMTFPVIYSSTLLIM 137
>Z81547-6|CAB04462.2| 313|Caenorhabditis elegans Hypothetical
protein F53F8.2 protein.
Length = 313
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 24 PTSYKH*TGQHSLFLYLFIKFPFIISRGVLIL 119
PT YK + + ++ + FP I S +LI+
Sbjct: 106 PTRYKMLEHERYKYFFILLAFPIIYSSALLIM 137
>Z81132-11|CAB03426.2| 302|Caenorhabditis elegans Hypothetical
protein T26E4.15 protein.
Length = 302
Score = 24.6 bits (51), Expect = 9.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 24 PTSYKH*TGQHSLFLYLFIKFPFIISRGVLIL 119
PT YK + +L+L + FP I S +LI+
Sbjct: 106 PTRYKLLENERYKYLFLQMTFPVIYSSTLLIM 137
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.312 0.121 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,846,217
Number of Sequences: 27780
Number of extensions: 29571
Number of successful extensions: 61
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 12,740,198
effective HSP length: 34
effective length of database: 11,795,678
effective search space used: 224117882
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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