Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13d14
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    73   6e-14
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    70   3e-13
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    40   3e-04
SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyc...    29   0.73 
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    27   3.0  
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    27   3.9  

>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 72.5 bits (170), Expect = 6e-14
 Identities = 33/45 (73%), Positives = 37/45 (82%)
 Frame = -1

Query: 769 VHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSDMQPGADDE 635
           VHWYVGEGMEEGEFSEAREDLAALERDY+EV  ++ D +    DE
Sbjct: 409 VHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDSMDNEMYEADE 453


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 70.1 bits (164), Expect = 3e-13
 Identities = 30/38 (78%), Positives = 35/38 (92%)
 Frame = -1

Query: 769 VHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSDM 656
           VHWYVGEGMEEGEFSEAREDLAALERDY+EV  ++ ++
Sbjct: 405 VHWYVGEGMEEGEFSEAREDLAALERDYEEVGQDSMEV 442


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = -1

Query: 769 VHWYVGEGMEEGEFSEAR---EDLAALERDYDEVAIETSDMQPGADDE 635
           +HWY GEGM+E EF+EA     DL +  + Y E  I+  D     ++E
Sbjct: 395 LHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAGIDEGDEDYEIEEE 442


>SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -3

Query: 110 NVGDNIIRACSAKRVYVKVMS 48
           N+GD+I+ AC  K +Y K++S
Sbjct: 131 NIGDDILSACIPKEIYEKMLS 151


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = +3

Query: 63  INSLCTTCSYNIVTDINAHFSV 128
           I++LCTTC+ +++T+I+   +V
Sbjct: 575 IHTLCTTCASHLLTEIDGFMAV 596


>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +1

Query: 694 VPELPNLLSLQRIRLPPSL 750
           +PELPNL +L+ +  PPSL
Sbjct: 15  IPELPNLEALRSLWPPPSL 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,001,531
Number of Sequences: 5004
Number of extensions: 59616
Number of successful extensions: 175
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)