Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13d14
(769 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical pr... 74 1e-13
U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin M... 72 5e-13
D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin... 72 5e-13
AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensor... 72 5e-13
AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin... 72 5e-13
Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical pr... 71 7e-13
U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha ... 71 7e-13
Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical pr... 69 3e-12
Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical p... 69 4e-12
Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical pr... 69 4e-12
Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical p... 69 4e-12
D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin... 69 4e-12
D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin... 69 4e-12
AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical ... 69 4e-12
AL023832-1|CAA19475.1| 85|Caenorhabditis elegans Hypothetical ... 69 4e-12
Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical pr... 67 1e-11
AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin... 67 1e-11
Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical p... 41 8e-04
Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical pr... 41 8e-04
Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical pr... 40 0.003
Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical pr... 39 0.005
X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin pr... 39 0.005
U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory ... 39 0.005
AF125961-2|AAD14739.1| 343|Caenorhabditis elegans Serpentine re... 29 4.8
AF068710-4|AAK72089.3| 340|Caenorhabditis elegans Serpentine re... 28 6.4
AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain (... 28 6.4
AC006680-6|AAK72300.1| 335|Caenorhabditis elegans Serpentine re... 28 6.4
>Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical
protein T28D6.2 protein.
Length = 444
Score = 74.1 bits (174), Expect = 1e-13
Identities = 34/45 (75%), Positives = 37/45 (82%)
Frame = -1
Query: 769 VHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSDMQPGADDE 635
VHWYVGEGMEEGEFSEAREDLAALE+DY+EV + SD DDE
Sbjct: 400 VHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAD-SDANDNGDDE 443
>U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin
MEC-12 protein.
Length = 450
Score = 71.7 bits (168), Expect = 5e-13
Identities = 31/45 (68%), Positives = 37/45 (82%)
Frame = -1
Query: 769 VHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSDMQPGADDE 635
VHWYVGEGMEEGEFSEAREDLAALE+DY+EV +++ + DE
Sbjct: 405 VHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSMEDNGEEGDE 449
>D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin
protein.
Length = 449
Score = 71.7 bits (168), Expect = 5e-13
Identities = 31/45 (68%), Positives = 37/45 (82%)
Frame = -1
Query: 769 VHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSDMQPGADDE 635
VHWYVGEGMEEGEFSEAREDLAALE+DY+EV +++ + DE
Sbjct: 404 VHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSMEDNGEEGDE 448
>AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensory
abnormality protein12 protein.
Length = 450
Score = 71.7 bits (168), Expect = 5e-13
Identities = 31/45 (68%), Positives = 37/45 (82%)
Frame = -1
Query: 769 VHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSDMQPGADDE 635
VHWYVGEGMEEGEFSEAREDLAALE+DY+EV +++ + DE
Sbjct: 405 VHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSMEDNGEEGDE 449
>AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin
(tba-3) protein.
Length = 450
Score = 71.7 bits (168), Expect = 5e-13
Identities = 31/45 (68%), Positives = 37/45 (82%)
Frame = -1
Query: 769 VHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSDMQPGADDE 635
VHWYVGEGMEEGEFSEAREDLAALE+DY+EV +++ + DE
Sbjct: 405 VHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSMEDNGEEGDE 449
>Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical
protein F16D3.1 protein.
Length = 447
Score = 71.3 bits (167), Expect = 7e-13
Identities = 29/37 (78%), Positives = 35/37 (94%)
Frame = -1
Query: 769 VHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSD 659
VHWYVGEGMEEGEFSEARED+AALE+DY+EV +++ D
Sbjct: 405 VHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSFD 441
>U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha
protein 9 protein.
Length = 456
Score = 71.3 bits (167), Expect = 7e-13
Identities = 31/45 (68%), Positives = 38/45 (84%)
Frame = -1
Query: 769 VHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSDMQPGADDE 635
VHWYVGEGMEEGEFSEAREDLAALE+DY+EV ++ +P +D+
Sbjct: 410 VHWYVGEGMEEGEFSEAREDLAALEKDYEEVGLDAG--EPDEEDD 452
>Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical
protein ZK899.4 protein.
Length = 452
Score = 69.3 bits (162), Expect = 3e-12
Identities = 29/44 (65%), Positives = 38/44 (86%)
Frame = -1
Query: 769 VHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSDMQPGADD 638
VHW+VGEGMEEGEF EAR+DLAALE+DY EV+ +T+D++ D+
Sbjct: 408 VHWFVGEGMEEGEFMEARDDLAALEKDYAEVSRDTADLEEENDE 451
>Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical
protein C47B2.3 protein.
Length = 448
Score = 68.9 bits (161), Expect = 4e-12
Identities = 28/37 (75%), Positives = 35/37 (94%)
Frame = -1
Query: 769 VHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSD 659
VHWYVGEGMEEGEF+EAREDLAALE+DY+EV ++++
Sbjct: 403 VHWYVGEGMEEGEFTEAREDLAALEKDYEEVGADSNE 439
>Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical
protein F26E4.8 protein.
Length = 449
Score = 68.9 bits (161), Expect = 4e-12
Identities = 28/37 (75%), Positives = 35/37 (94%)
Frame = -1
Query: 769 VHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSD 659
VHWYVGEGMEEGEF+EAREDLAALE+DY+EV ++++
Sbjct: 403 VHWYVGEGMEEGEFTEAREDLAALEKDYEEVGADSNE 439
>Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 68.9 bits (161), Expect = 4e-12
Identities = 28/37 (75%), Positives = 35/37 (94%)
Frame = -1
Query: 769 VHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSD 659
VHWYVGEGMEEGEF+EAREDLAALE+DY+EV ++++
Sbjct: 403 VHWYVGEGMEEGEFTEAREDLAALEKDYEEVGADSNE 439
>D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin
protein.
Length = 449
Score = 68.9 bits (161), Expect = 4e-12
Identities = 28/37 (75%), Positives = 35/37 (94%)
Frame = -1
Query: 769 VHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSD 659
VHWYVGEGMEEGEF+EAREDLAALE+DY+EV ++++
Sbjct: 403 VHWYVGEGMEEGEFTEAREDLAALEKDYEEVGADSNE 439
>D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin
protein.
Length = 448
Score = 68.9 bits (161), Expect = 4e-12
Identities = 28/37 (75%), Positives = 35/37 (94%)
Frame = -1
Query: 769 VHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSD 659
VHWYVGEGMEEGEF+EAREDLAALE+DY+EV ++++
Sbjct: 403 VHWYVGEGMEEGEFTEAREDLAALEKDYEEVGADSNE 439
>AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 68.9 bits (161), Expect = 4e-12
Identities = 28/37 (75%), Positives = 35/37 (94%)
Frame = -1
Query: 769 VHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSD 659
VHWYVGEGMEEGEF+EAREDLAALE+DY+EV ++++
Sbjct: 403 VHWYVGEGMEEGEFTEAREDLAALEKDYEEVGADSNE 439
>AL023832-1|CAA19475.1| 85|Caenorhabditis elegans Hypothetical
protein Y19D2B.1 protein.
Length = 85
Score = 68.9 bits (161), Expect = 4e-12
Identities = 28/37 (75%), Positives = 35/37 (94%)
Frame = -1
Query: 769 VHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSD 659
VHWYVGEGMEEGEF+EAREDLAALE+DY+EV ++++
Sbjct: 40 VHWYVGEGMEEGEFTEAREDLAALEKDYEEVGADSNE 76
>Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical
protein F32H2.9 protein.
Length = 464
Score = 66.9 bits (156), Expect = 1e-11
Identities = 27/31 (87%), Positives = 31/31 (100%)
Frame = -1
Query: 769 VHWYVGEGMEEGEFSEAREDLAALERDYDEV 677
VHWYVGEGMEEGEFSEARED+AALE+DY+E+
Sbjct: 411 VHWYVGEGMEEGEFSEAREDMAALEKDYEEI 441
>AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin
(tba-6) protein.
Length = 435
Score = 66.9 bits (156), Expect = 1e-11
Identities = 27/31 (87%), Positives = 31/31 (100%)
Frame = -1
Query: 769 VHWYVGEGMEEGEFSEAREDLAALERDYDEV 677
VHWYVGEGMEEGEFSEARED+AALE+DY+E+
Sbjct: 383 VHWYVGEGMEEGEFSEAREDMAALEKDYEEI 413
>Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical
protein K01G5.7 protein.
Length = 449
Score = 41.1 bits (92), Expect = 8e-04
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = -1
Query: 769 VHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSDMQP 650
+HWY GEGM+E EF+EA ++ L +Y + T++ +P
Sbjct: 395 LHWYTGEGMDEMEFTEAESNMNDLISEYQQYQEATAEDEP 434
>Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical
protein B0272.1 protein.
Length = 444
Score = 41.1 bits (92), Expect = 8e-04
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = -1
Query: 769 VHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSDMQPGADD 638
+HWY GEGM+E EF+EA ++ L +Y + T+D + D+
Sbjct: 395 LHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEATADDEGEFDE 438
>Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical
protein C54C6.2 protein.
Length = 444
Score = 39.5 bits (88), Expect = 0.003
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = -1
Query: 769 VHWYVGEGMEEGEFSEAR---EDLAALERDYDEVAIETSDMQPGADDE 635
+HWY GEGM+E EF+EA DL + + Y E E G D +
Sbjct: 395 LHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEATAEEDGELDGTDGD 442
>Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical
protein C36E8.5 protein.
Length = 450
Score = 38.7 bits (86), Expect = 0.005
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = -1
Query: 769 VHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSD 659
+HWY GEGM+E EF+EA ++ L +Y + T++
Sbjct: 395 LHWYTGEGMDEMEFTEAESNMNDLISEYQQYQEATAE 431
>X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin
protein.
Length = 441
Score = 38.7 bits (86), Expect = 0.005
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = -1
Query: 769 VHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSD 659
+HWY GEGM+E EF+EA ++ L +Y + +D
Sbjct: 395 LHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAAAD 431
>U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory
abnormality protein7 protein.
Length = 441
Score = 38.7 bits (86), Expect = 0.005
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = -1
Query: 769 VHWYVGEGMEEGEFSEAREDLAALERDYDEVAIETSD 659
+HWY GEGM+E EF+EA ++ L +Y + +D
Sbjct: 395 LHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAAAD 431
>AF125961-2|AAD14739.1| 343|Caenorhabditis elegans Serpentine
receptor, class j protein15 protein.
Length = 343
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = -1
Query: 232 CGQCLPHTHFLLLRHVILRYISLFWP 155
CG C+ ++ +L+ H I RYI+LF+P
Sbjct: 99 CG-CISLSYGILIIHFIYRYITLFFP 123
>AF068710-4|AAK72089.3| 340|Caenorhabditis elegans Serpentine
receptor, class j protein16 protein.
Length = 340
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = -1
Query: 232 CGQCLPHTHFLLLRHVILRYISLFWP 155
CG C+ ++ +L+ H I RYI+LF+P
Sbjct: 99 CG-CVSLSYGILIIHFIYRYITLFFP 123
>AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 5
protein.
Length = 1434
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 516 KYRINNFKSKAHSSSSDFVTRDKYTIAKVQIELSYKNDHNSSSAPGC 656
KYR + + S + + D+Y + Q E S K +HN+ AP C
Sbjct: 396 KYRKTSVSADP-KSHTPILMADEYKEPQKQGEFSSKKNHNTHQAPAC 441
>AC006680-6|AAK72300.1| 335|Caenorhabditis elegans Serpentine
receptor, class j protein13 protein.
Length = 335
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = -1
Query: 232 CGQCLPHTHFLLLRHVILRYISLFWP 155
CG C+ ++ +L+ H I RYI+LF+P
Sbjct: 99 CG-CISLSYGILVIHFIYRYIALFFP 123
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,593,454
Number of Sequences: 27780
Number of extensions: 333497
Number of successful extensions: 847
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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