Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13d12
         (755 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of...    30   2.0  
U43375-1|AAA83618.1|  709|Caenorhabditis elegans Sulfatase domai...    29   3.6  
AF077531-4|AAC64611.1|  437|Caenorhabditis elegans Hypothetical ...    29   4.7  
U41105-12|AAA82406.1|  556|Caenorhabditis elegans Hypothetical p...    28   6.2  

>AF067949-1|AAC19236.2| 1446|Caenorhabditis elegans Suppressor of
           constitutive dauerformation protein 2 protein.
          Length = 1446

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
 Frame = +1

Query: 397 PFIVNVDCDI---KKKSRNAPFTCKV 465
           PF +++DC+     KK +N PFTC +
Sbjct: 283 PFKISIDCETGFPPKKKKNKPFTCSI 308


>U43375-1|AAA83618.1|  709|Caenorhabditis elegans Sulfatase domain
           protein protein 1 protein.
          Length = 709

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -2

Query: 367 PICCLFRTIDIFGLFKRNRSTHVHN-NCN*KASEYKINESK 248
           PICC  R+  + GL+  N   H +N NC       K++E K
Sbjct: 77  PICCPSRSTILTGLYVHNHHVHTNNQNCT-GVEWRKVHEKK 116


>AF077531-4|AAC64611.1|  437|Caenorhabditis elegans Hypothetical
           protein F13C5.1 protein.
          Length = 437

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = -1

Query: 506 IPHTTFFIANVHDYTLHVKGAFLLFFLISQSTFTMNGAFIMH 381
           IP   ++   + +  + +   FL +FL+S STF+++ +   H
Sbjct: 368 IPFLAYYSVEMFNIVIFIPKTFLSYFLVSFSTFSISSSSSTH 409


>U41105-12|AAA82406.1|  556|Caenorhabditis elegans Hypothetical
           protein T02G5.12 protein.
          Length = 556

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +3

Query: 561 VFNIXFTLSNTFTVMCFEMKEYLLC*HVFNVYNVTTTSYSCL 686
           ++NI  T+    T  C++   Y+L      ++  T  SY CL
Sbjct: 429 MYNISLTICGIVTAFCYKFDGYILLDIYAVLFGFTIASYVCL 470


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,248,619
Number of Sequences: 27780
Number of extensions: 267339
Number of successful extensions: 573
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)