Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13d10
(786 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc... 30 0.33
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.57
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 29 0.76
SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase |Schizosac... 27 2.3
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 27 3.0
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 27 4.0
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 27 4.0
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 27 4.0
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90... 27 4.0
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 26 5.3
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 26 5.3
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces... 26 7.0
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 9.3
SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1 |Schizosa... 25 9.3
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 9.3
>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 30.3 bits (65), Expect = 0.33
Identities = 21/83 (25%), Positives = 37/83 (44%)
Frame = -1
Query: 588 VEMLPAKLFHSPAPSLPQTLAPQPTTGKFKNDCSYKNIKSTVSKTSIIGHKSIGKIPSKN 409
++ P +L+H S+ L Q F N + KN+ VSK+ ++ I +
Sbjct: 115 IQSFPTRLYHICRNSIKSILQFQ----NFSNIFAKKNLFPKVSKSDVLLFPRDAFISQAS 170
Query: 408 QLQHIYNQYKGSQSHTQQNVQEH 340
L I ++Y+G+ +Q EH
Sbjct: 171 LLSLIRHEYRGNAKRLRQLRDEH 193
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.5 bits (63), Expect = 0.57
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Frame = -1
Query: 783 DQNPATATHQLPQT----MIETNVQLNENANVLKQNKPGIQ--QENIKEPIFPIDTSKHQ 622
DQ AT + +T + E Q NE+ L+Q K + + NI+ + P +
Sbjct: 1102 DQTSPEATQERNRTISSKLAEMEKQKNESKAALEQMKNYVTNIENNIRAKLLP-SAANDD 1160
Query: 621 SHREYNTLGQPVEMLPAKLFHSPAPSLPQTLAP 523
+ N + + V + +L PAP+ PQTL P
Sbjct: 1161 AWLSQNVVDESVTRVVKEL-PVPAPAAPQTLNP 1192
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 29.1 bits (62), Expect = 0.76
Identities = 32/160 (20%), Positives = 66/160 (41%), Gaps = 9/160 (5%)
Frame = -1
Query: 768 TATHQLPQTMIETNVQLNENANVLKQNKPGIQQENIKEPIFPIDTSKHQSHREY------ 607
T+TH T NV+ N N K ++ N+K+ P+ + + + E+
Sbjct: 189 TSTHTGSST---DNVEANPNTGFSSARKRSLRSSNLKKKFVPLSSPEESNESEFIDDDES 245
Query: 606 NTLGQPVEMLPAKLFHSPAPSLPQTLAPQPTTGKFKND--CSYKNIKSTVSKTSIIGHKS 433
+ + +++ + F S +P+ AP +T + SY++ + VS + S
Sbjct: 246 DEVASIIDIKEDETFDSKV-EIPEA-APSSSTESDEESIPLSYQSKRRRVSARASSSASS 303
Query: 432 IGKIPSKNQLQHIYNQYKGSQSHTQ-QNVQEHLNVTSASE 316
+ +K+ H Y+ + H + ++V E L + E
Sbjct: 304 SSRTQAKSIPSHERTHYRLIRQHPELEHVWEKLEEEAPRE 343
>SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 205
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -1
Query: 711 NANVLKQNKPGIQQENIKEPIFPIDTSKHQSHREYNTL--GQPVEMLPAKL 565
++ + N PG+ N+K + ID SK ++ L G+ +E P KL
Sbjct: 118 DSTTVMYNDPGLTNANLKIILADIDMSKPENQNPQQQLDDGEYIENFPIKL 168
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 27.1 bits (57), Expect = 3.0
Identities = 23/110 (20%), Positives = 46/110 (41%)
Frame = -1
Query: 567 LFHSPAPSLPQTLAPQPTTGKFKNDCSYKNIKSTVSKTSIIGHKSIGKIPSKNQLQHIYN 388
+F + P + +P K ++ S + S+V K S + + PSK+
Sbjct: 90 MFEESSKQSPPSKSPTKNPSKKSSNNSSRRSSSSVGKLSNVSNMQSS--PSKDPFV---- 143
Query: 387 QYKGSQSHTQQNVQEHLNVTSASEGRLRTAQTDVHHQALVEKEGGDVLRN 238
SQ + ++++ SEG L++ Q++ ++ EK+ D N
Sbjct: 144 ----SQDYEKESISSSQFSKKYSEGSLKSQQSNTRSNSVHEKQNTDHASN 189
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 26.6 bits (56), Expect = 4.0
Identities = 14/70 (20%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = -1
Query: 345 EHLNVTSASEGRLRTAQTDVHHQALVEKEGGDVLRNNPLQP--KRLEATFEQGGDASINK 172
+H+ + +R + + H+Q++++ G V N+P+ P +L+ + + + K
Sbjct: 163 KHIIILQNKVDLIRESAAEEHYQSILKFIKGTVAENSPIVPISAQLKYNIDAILEYIVKK 222
Query: 171 LGVPEKSETT 142
+ +P + TT
Sbjct: 223 IPIPVRDFTT 232
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/61 (21%), Positives = 30/61 (49%)
Frame = -1
Query: 210 ATFEQGGDASINKLGVPEKSETTKSAKCRNGLQDMVYTSYPTSTAWSFHGNRGPPVTANQ 31
++ GDAS N++ VP+KS +A L ++++ + ++ N P+ + +
Sbjct: 712 SSISSDGDASSNRMAVPDKSPFVHAAPNSKALTKDSFSTHISVSSLLHSDNEISPIDSTR 771
Query: 30 R 28
+
Sbjct: 772 K 772
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 26.6 bits (56), Expect = 4.0
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Frame = -1
Query: 555 PAPSLPQTLAPQPTTGKFKNDCSYKNIKSTVSKTSIIGHKSIGKIPSKNQLQHIYNQYKG 376
P SLP+ ++ QPT K S ++ S +SKT + I N+++H+
Sbjct: 712 PLSSLPEEVSRQPTDDK-GEQVSNADVDSGLSKTERL------TIQQTNEIKHVPTNTTS 764
Query: 375 SQSHTQQ--NVQEHLNVTSA 322
S QQ N E +T+A
Sbjct: 765 SVKLPQQPSNEDEKERITTA 784
>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 717 NENANVLKQNKPGIQQENIKEPIF 646
N N N+ +N PG Q+ I EPIF
Sbjct: 92 NRNDNIPHENNPG--QQEINEPIF 113
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 26.2 bits (55), Expect = 5.3
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -1
Query: 780 QNPATATHQLPQTMIETNVQLNENANVLKQNKPGIQQENIKEPIFPIDTSK 628
QNPA +T LP T +N AN + Q +P Q + P TSK
Sbjct: 178 QNPAISTSNLPSTTPLYIPPVNYGANQVSQ-QPNPQLPGVSNYYNPSATSK 227
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 26.2 bits (55), Expect = 5.3
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 403 QLILAGNFPYRLVTNYR 453
+LI+ GN P+RLV YR
Sbjct: 615 RLIILGNSPFRLVVQYR 631
>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 25.8 bits (54), Expect = 7.0
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +1
Query: 514 RWLRC*RLRKTRGRAVEEFRWKHFHR 591
+W+RC + + E F W+H HR
Sbjct: 310 KWIRCQGRKDVSVKIPEIFWWRHAHR 335
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.4 bits (53), Expect = 9.3
Identities = 28/135 (20%), Positives = 55/135 (40%), Gaps = 2/135 (1%)
Frame = -1
Query: 624 QSHREYNTLGQPVEMLPAKLFHSPAPSLPQTLAPQPTTGKFKNDCSYKNIKSTVSKTSII 445
Q+H++ T QP ++ SP PQ L+P+P G K+ ++ T +T +
Sbjct: 375 QTHKK--TSSQPSDLSSFAQLLSP----PQVLSPKPNGGGHKSFRHSHSLSETSQQTLVP 428
Query: 444 GHKSIGKIPSKNQLQHIYNQYKGSQSHTQQNVQEHLNVTSASEGRL--RTAQTDVHHQAL 271
S G+ H + + + ++E L +A +L R + + +
Sbjct: 429 SLGSNGEYHLPTN-DHSSTPAQSERDSDVEELREQLENLTALTKKLSERLSSSTFDNSKF 487
Query: 270 VEKEGGDVLRNNPLQ 226
+ E D +R+ L+
Sbjct: 488 IRTEDKDTVRSAKLE 502
>SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 222
Score = 25.4 bits (53), Expect = 9.3
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -1
Query: 720 LNENANVLKQNKPGIQQEN--IKEPIFPIDTSKHQSHREYNTLGQPVEML 577
+ EN N L N G+ + N ++ P + T H +E+N L + + +
Sbjct: 18 VRENENELHINNSGMSELNKKLQLPNVELSTLSHTQEQEFNELNKLIRKI 67
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.4 bits (53), Expect = 9.3
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Frame = -1
Query: 714 ENANVLKQNKPGIQQENIKEP-IFPIDTSKHQSHREYNTLGQPVEMLPAKLFHSPAPSLP 538
E L+ + + EN +P FP + R NTL + L P PS+P
Sbjct: 50 EYLQALQMQQSLSESENYLQPNFFPFQSGPFSKSRRENTLLPRLNPLAPIGARQPNPSIP 109
Query: 537 Q 535
Q
Sbjct: 110 Q 110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,370,979
Number of Sequences: 5004
Number of extensions: 72573
Number of successful extensions: 252
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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