Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13d10
         (786 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.         29   0.16 
U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.         29   0.16 
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            24   4.6  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         24   4.6  
AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative Tyr/Ser/T...    24   4.6  
AJ439398-6|CAD28129.1| 1978|Anopheles gambiae putative Tyr/Ser/T...    24   4.6  
AY545988-1|AAS99341.1|  423|Anopheles gambiae carboxypeptidase B...    23   8.1  
AJ627286-1|CAF28572.1|  423|Anopheles gambiae carboxypeptidase B...    23   8.1  
AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript...    23   8.1  

>U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 29.1 bits (62), Expect = 0.16
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
 Frame = -1

Query: 708 ANVLKQNKPGIQQENIKEPIFP--------IDTSKHQSHREYN-TLGQPVEMLPAKLFHS 556
           A   +Q +P  Q   I+EPI P        +   +H  H  ++  L  P        ++ 
Sbjct: 142 ATAEQQQQPHPQSPAIREPISPGPIHPAVLLPYPQHVLHPAHHPALLHPAYHTGLHHYYQ 201

Query: 555 PAPSLPQTLAPQP 517
           P+PS PQ + PQP
Sbjct: 202 PSPSHPQPIVPQP 214


>U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 29.1 bits (62), Expect = 0.16
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
 Frame = -1

Query: 708 ANVLKQNKPGIQQENIKEPIFP--------IDTSKHQSHREYN-TLGQPVEMLPAKLFHS 556
           A   +Q +P  Q   I+EPI P        +   +H  H  ++  L  P        ++ 
Sbjct: 142 ATAEQQQQPHPQSPAIREPISPGPIHPAVLLPYPQHVLHPAHHPALLHPAYHTGLHHYYQ 201

Query: 555 PAPSLPQTLAPQP 517
           P+PS PQ + PQP
Sbjct: 202 PSPSHPQPIVPQP 214


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 558 SPAPSLPQTLAPQPTTGKFKNDCSYKNIKSTVSKTSIIGHKSI 430
           SP PSLP   +P+P+    ++    K    +V+  S +  KS+
Sbjct: 362 SPVPSLPVRSSPEPSPVLLRSPTPAKKPLISVAPASKLLSKSL 404


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 201 EQGGDASINKLGVPEKSETTKSAKCRNG 118
           E   DA I ++ +  + E    AKCRNG
Sbjct: 712 ETATDAMIEQVAIYREVEKLLLAKCRNG 739


>AJ441131-7|CAD29636.1| 1977|Anopheles gambiae putative Tyr/Ser/Thr
            phosphatase protein.
          Length = 1977

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 654  PIFPIDTSKHQSHREYNTL 598
            P+ PIDTS   +H E N L
Sbjct: 1042 PLGPIDTSALSTHHEQNLL 1060


>AJ439398-6|CAD28129.1| 1978|Anopheles gambiae putative Tyr/Ser/Thr
            phosphatase protein.
          Length = 1978

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 654  PIFPIDTSKHQSHREYNTL 598
            P+ PIDTS   +H E N L
Sbjct: 1040 PLGPIDTSALSTHHEQNLL 1058


>AY545988-1|AAS99341.1|  423|Anopheles gambiae carboxypeptidase B
           precursor protein.
          Length = 423

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +3

Query: 276 LDGGHQFAQFVNVLPKQMSHSDVLEHSAEYETASLCTDY 392
           +DGG    ++  V+       + +EHS +Y      TDY
Sbjct: 182 MDGGIHAREWAGVMSVMYMIHEFVEHSDQYAEQLSNTDY 220


>AJ627286-1|CAF28572.1|  423|Anopheles gambiae carboxypeptidase B
           protein.
          Length = 423

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +3

Query: 276 LDGGHQFAQFVNVLPKQMSHSDVLEHSAEYETASLCTDY 392
           +DGG    ++  V+       + +EHS +Y      TDY
Sbjct: 182 MDGGIHAREWAGVMSVMYMIHEFVEHSDQYAEQLSNTDY 220


>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1022

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 281 WWTSVCAVRKRPSEA 325
           WWTSV A  +R S+A
Sbjct: 279 WWTSVIADLRRKSKA 293


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 857,464
Number of Sequences: 2352
Number of extensions: 18165
Number of successful extensions: 60
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 82328994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)