Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13d01
         (426 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   1.2  
SPCC1442.09 |trp3||anthranilate synthase component I|Schizosacch...    25   3.7  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   3.7  
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom...    25   4.9  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    25   6.5  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    24   8.6  
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom...    24   8.6  

>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
 Frame = +2

Query: 209 TGHTPASTYFSRTKN-NNIVNTTATAWSSLIFNMKT*SCFEFYCYFVYNKVLTLIYKVTN 385
           TG+T   T   R ++  N +   AT   SLIF      CF  Y   VY      I    N
Sbjct: 303 TGNTAYYTIHERERDPKNAMIQAATQAVSLIFTEPIVVCFTLYLTVVY------IINYIN 356

Query: 386 IEGQPL 403
            EG P+
Sbjct: 357 FEGYPI 362


>SPCC1442.09 |trp3||anthranilate synthase component
           I|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 489

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 163 CVVI*TWFYIDATVFYRAYSGQYVFFSHKEQQHSE 267
           C+ I T  Y D TV+ +A  G  VF S ++ ++ E
Sbjct: 429 CIAIRTMVYKDGTVYLQA-GGGIVFDSDEQDEYVE 462


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 177 SDDDTVSSISPMSYSANN 124
           SDDDT+SS++ M Y  N+
Sbjct: 23  SDDDTMSSLTRMIYDKNS 40


>SPBC1703.13c |||inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 242 RTKNNNIVNTTATAWSSLIFN 304
           +T N    NTT  AWS ++ N
Sbjct: 149 QTSNPRFANTTREAWSKIVTN 169


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -1

Query: 156 SISPMSYSANNFIARARVSTH--SKPKYKRDPEIE 58
           S+SPM+ +A++ +  + V TH  S P   R P ++
Sbjct: 301 SLSPMASTASSSVTNSPVDTHTPSTPIMSRPPSMK 335


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 19  EFLRVFTDIFVVDFNFRVSFIF 84
           E++   TD F  DF  RVS+ F
Sbjct: 367 EYMFSLTDFFYSDFELRVSYDF 388


>SPAC23H3.05c |swd1||COMPASS complex subunit
           Swd1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 12/55 (21%), Positives = 27/55 (49%)
 Frame = +2

Query: 146 GLILETVSSSEHGSISMRRFFTGHTPASTYFSRTKNNNIVNTTATAWSSLIFNMK 310
           GL+  +V   +  + S+ R  TGHT A      +  +  + T +  W  ++++++
Sbjct: 42  GLVNGSVVIWDLSTFSVSRVLTGHTRAIQSVCWSSCDRFLLTASRDWKCILWDLR 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,738,483
Number of Sequences: 5004
Number of extensions: 34102
Number of successful extensions: 126
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)