Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13d01
         (426 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0172 - 13072575-13073800,13075919-13076054                       29   1.6  
09_04_0754 - 19946423-19947061,19947315-19947429,19947509-199475...    29   2.1  
09_06_0261 - 21919017-21920594                                         28   2.7  
02_04_0300 + 21784634-21784691,21784784-21784893,21787486-217877...    28   3.6  
12_01_0079 + 644754-645932,645966-646061,646193-647122                 27   6.3  
11_01_0078 + 609005-610183,610217-610312,610444-611373                 27   6.3  
09_04_0746 - 19888479-19888622,19888739-19888867,19889061-198895...    27   6.3  
11_04_0281 + 15733505-15733647,15734366-15734443,15734835-157350...    27   8.3  

>09_03_0172 - 13072575-13073800,13075919-13076054
          Length = 453

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 118 NEIICRIRHRTDTGNCVVI*TWFYIDATVFYRAYSGQYVFFSHKEQ 255
           NE++C + H+    NCVV+        T F+  Y   + +F H+ Q
Sbjct: 227 NEVVCLLSHKPTYPNCVVL--VVNCRNTSFWYCYPQGHTWFKHEYQ 270


>09_04_0754 -
           19946423-19947061,19947315-19947429,19947509-19947587,
           19947863-19948007
          Length = 325

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
 Frame = -1

Query: 255 LFFVREKYVLAGVCPVKNRRIDIEPCSDDDTVSSISPMSYSANNFIARARVSTHSKPK-- 82
           + F RE  +L    PVK  R  I+P     +  + SP S S+ +    AR S+ S  K  
Sbjct: 97  MVFQRELPILQ---PVKTSRFSIKPEPTSTSTRTESPTSSSSKSATPTARSSSSSSKKNF 153

Query: 81  YKRDPEI-EVDNEY 43
            K DP + EV   Y
Sbjct: 154 TKGDPALSEVTTAY 167


>09_06_0261 - 21919017-21920594
          Length = 525

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 331 KFKAALCFHIKDEAAPRSSCCVHYVVVLCAR 239
           +   A+CF + D    RS+ C H+  V C R
Sbjct: 130 RLTCAICFDVFDTGGMRSAGCSHFYCVSCWR 160


>02_04_0300 +
           21784634-21784691,21784784-21784893,21787486-21787771,
           21788292-21788472,21788978-21789195,21789511-21789631,
           21789703-21789800,21789894-21790105,21790199-21790311,
           21790404-21790499,21790626-21790841,21790958-21791099,
           21791280-21791525,21792078-21792389
          Length = 802

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 153 YWKLCRHLNMVLYRCDGF 206
           +WK+C+ L++  Y+ DGF
Sbjct: 762 FWKMCKILHLFYYQTDGF 779


>12_01_0079 + 644754-645932,645966-646061,646193-647122
          Length = 734

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 186 EPCSDDDTVSSISPMSYSANNF 121
           +PC D D ++ + P+S S +NF
Sbjct: 542 DPCYDPDAIALLGPVSESLDNF 563


>11_01_0078 + 609005-610183,610217-610312,610444-611373
          Length = 734

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 186 EPCSDDDTVSSISPMSYSANNF 121
           +PC D D ++ + P+S S +NF
Sbjct: 542 DPCYDPDAIALLGPVSESLDNF 563


>09_04_0746 -
           19888479-19888622,19888739-19888867,19889061-19889548,
           19889666-19889843,19889920-19889991,19890993-19891193
          Length = 403

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -1

Query: 174 DDDTVSSISPMSYSAN-NFIARARVSTHSKPKYKRDPEIEVDNEYIGE 34
           D D+     P++ +AN  F+AR  ++  S P  +  PE E + +   E
Sbjct: 149 DQDSDMQSDPIALTANFTFVARDSMTGKSAPVNRLSPETEKEKQLFAE 196


>11_04_0281 +
           15733505-15733647,15734366-15734443,15734835-15735077,
           15735868-15736012,15736234-15736293,15736376-15736471,
           15736651-15737067,15737824-15737964,15738043-15738213,
           15738394-15738651,15738741-15738889,15739060-15739557,
           15740147-15740420,15740631-15740696,15740891-15741057,
           15741413-15741497,15741673-15741732
          Length = 1016

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/41 (26%), Positives = 26/41 (63%)
 Frame = -1

Query: 171 DDTVSSISPMSYSANNFIARARVSTHSKPKYKRDPEIEVDN 49
           D + S +S  ++++NN+ +R+  S+ ++ +Y R    ++DN
Sbjct: 292 DASKSGLSNENFASNNYTSRSYSSSLTQSQYLRSSNGDLDN 332


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,383,646
Number of Sequences: 37544
Number of extensions: 186677
Number of successful extensions: 494
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)