Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13d01
         (426 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ138896-1|ABA86502.1| 1309|Drosophila melanogaster CG18265 prot...    29   3.4  
BT011387-1|AAR96179.1| 1322|Drosophila melanogaster GH10077p pro...    29   3.4  
AE014296-2912|AAF49339.1| 1322|Drosophila melanogaster CG18265-P...    29   3.4  
AE014298-2907|AAF48997.1|  581|Drosophila melanogaster CG14223-P...    28   6.0  
BT022385-1|AAY54801.1|  124|Drosophila melanogaster IP05263p pro...    27   7.9  
AY119517-1|AAM50171.1|  244|Drosophila melanogaster GH14476p pro...    27   7.9  
AE013599-3915|AAF47238.1|  244|Drosophila melanogaster CG3565-PA...    27   7.9  

>DQ138896-1|ABA86502.1| 1309|Drosophila melanogaster CG18265
           protein.
          Length = 1309

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = -1

Query: 186 EPCSDDDTVSSISPMSYSANNFIARARVSTHSKPKYKRDPEIEVDNE 46
           +P S D+   + +      N  +A+A  +T  + + +R+PE+E D+E
Sbjct: 623 QPGSKDEAQMASAWPFMPLNLMLAKAAAATMDQQEQEREPEVETDSE 669


>BT011387-1|AAR96179.1| 1322|Drosophila melanogaster GH10077p
           protein.
          Length = 1322

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = -1

Query: 186 EPCSDDDTVSSISPMSYSANNFIARARVSTHSKPKYKRDPEIEVDNE 46
           +P S D+   + +      N  +A+A  +T  + + +R+PE+E D+E
Sbjct: 630 QPGSKDEAQMASAWPFMPLNLMLAKAAAATMDQQEQEREPEVETDSE 676


>AE014296-2912|AAF49339.1| 1322|Drosophila melanogaster CG18265-PA
           protein.
          Length = 1322

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = -1

Query: 186 EPCSDDDTVSSISPMSYSANNFIARARVSTHSKPKYKRDPEIEVDNE 46
           +P S D+   + +      N  +A+A  +T  + + +R+PE+E D+E
Sbjct: 630 QPGSKDEAQMASAWPFMPLNLMLAKAAAATMDQQEQEREPEVETDSE 676


>AE014298-2907|AAF48997.1|  581|Drosophila melanogaster CG14223-PA
           protein.
          Length = 581

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +1

Query: 184 FYIDATVFYRAYSGQYVFFSHKEQQHSEHNSYCVEQPH 297
           F  + +V +  Y+ Q++  SH++QQ    + +  +Q H
Sbjct: 184 FLGNGSVHHHTYTNQHILASHQQQQQQHQHHHQQQQHH 221


>BT022385-1|AAY54801.1|  124|Drosophila melanogaster IP05263p
           protein.
          Length = 124

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 256 VVLCARKIRTGRSMPCKKPSHRYRT 182
           V + + + +TG +  C+KP  RYRT
Sbjct: 12  VPVSSSRCKTGATRSCRKPGSRYRT 36


>AY119517-1|AAM50171.1|  244|Drosophila melanogaster GH14476p
           protein.
          Length = 244

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 13  LDEFLRVFTDIFVVDFNFRVSFIFGL*VSTDSSARN 120
           L+ F+R+FT  F  D   ++ F F +   +DS   N
Sbjct: 106 LESFVRLFTVYFTKDLQLKMEFAFSVYDKSDSKQLN 141


>AE013599-3915|AAF47238.1|  244|Drosophila melanogaster CG3565-PA
           protein.
          Length = 244

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 13  LDEFLRVFTDIFVVDFNFRVSFIFGL*VSTDSSARN 120
           L+ F+R+FT  F  D   ++ F F +   +DS   N
Sbjct: 106 LESFVRLFTVYFTKDLQLKMEFAFSVYDKSDSKQLN 141


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,290,158
Number of Sequences: 53049
Number of extensions: 351247
Number of successful extensions: 1203
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1313584398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)