Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13d01
         (426 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68315-2|CAA92668.1|  535|Caenorhabditis elegans Hypothetical pr...    28   2.4  
Z83316-6|CAD30429.2|  491|Caenorhabditis elegans Hypothetical pr...    27   5.6  
Z81097-17|CAF31479.2|  269|Caenorhabditis elegans Hypothetical p...    27   5.6  
AC024849-1|AAK68546.2|  374|Caenorhabditis elegans Hypothetical ...    27   7.4  
Z78416-3|CAB01680.2|  631|Caenorhabditis elegans Hypothetical pr...    26   9.8  

>Z68315-2|CAA92668.1|  535|Caenorhabditis elegans Hypothetical
           protein F28C6.2 protein.
          Length = 535

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = -1

Query: 177 SDDDTVSSISPMSYSANNFIARARVSTHSKPKYKRDPEIEVDNEYIGEHPQ 25
           S++D +    P    +N +    +++ + K   K+  E+E +    GEH Q
Sbjct: 442 SNEDVIPGQKPFERMSNEYFVEWQMNLYKKKLAKQMEEVEENKSQRGEHQQ 492


>Z83316-6|CAD30429.2|  491|Caenorhabditis elegans Hypothetical
           protein B0379.4b protein.
          Length = 491

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -1

Query: 174 DDDTVSSISPM-SYSANNFIARARVSTHSKPKYKR 73
           DDDT S+  P+ S+SAN  I + R +   KP++ R
Sbjct: 172 DDDTAST--PLNSFSANASIEKKRSTARRKPRWAR 204


>Z81097-17|CAF31479.2|  269|Caenorhabditis elegans Hypothetical
           protein K07A1.16 protein.
          Length = 269

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 279 VAVVFTMLLFFVREKYVLAGVCPVKNRRIDIEPCSDDDTVS 157
           V +    L +FV   +   GV P+    +D E CS D TV+
Sbjct: 113 VQLAAAYLSYFVARLFWSIGVHPIHLELLDAESCSSDLTVA 153


>AC024849-1|AAK68546.2|  374|Caenorhabditis elegans Hypothetical
           protein Y67D8B.1 protein.
          Length = 374

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -3

Query: 298 DEA--APRSSCCVHYVVVLCARKIRTGRSMP-CKKP 200
           DEA   P    C+H + +LCA  + +  S P C+ P
Sbjct: 26  DEAILVPVLGACLHSICILCATGLESPNSCPICENP 61


>Z78416-3|CAB01680.2|  631|Caenorhabditis elegans Hypothetical
           protein C23H4.3 protein.
          Length = 631

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 209 TGHTPASTYFSRTKNNNIVNTTATAWSSLIFN 304
           T  T   T   +  N+N V TTA+A SSL+ N
Sbjct: 559 TKTTKGFTSIHQDNNSNTVTTTASAQSSLLKN 590


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,599,100
Number of Sequences: 27780
Number of extensions: 188795
Number of successful extensions: 646
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)