Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13c23
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    27   3.6  
SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz...    27   3.6  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    27   3.6  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    26   4.8  
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    26   4.8  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    26   6.4  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    26   6.4  

>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
 Frame = +1

Query: 274 PQPRVKSKTDTAMCSRSRTNSLMISAIVGLERTLQ-------YIKKSSLLIALRAVLVAG 432
           P+  VKS+TD +       N+L   A + + + LQ       Y     LL+ LR      
Sbjct: 644 PKTAVKSETDLSSSEMEFYNTLQSGAQIQMRKYLQEGTITTHYGSLLVLLLRLRQACCHP 703

Query: 433 NVLVPRAAETGLQVSQQ*RHH*YYDLLYDGFVHRLQ 540
            ++V R A      S Q ++   Y+ +Y   V+RL+
Sbjct: 704 WLIVAREAAVDDNDSFQAKNRAIYNQIYPEAVNRLK 739


>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 375

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 18/87 (20%), Positives = 35/87 (40%)
 Frame = -1

Query: 473 TWSPVSAARGTSTLPATRTALSAIRSEDFLIY*SVLSSPTMALIINEFVLLLLHIAVSVF 294
           TW+PV ++  ++     R  +S + S    +  +  ++PT+  +++       H   S  
Sbjct: 45  TWTPVVSSVTSTQTDTLRVTISEVVSVTATLTETFTATPTVTSVVHALATTDPHPDNSKI 104

Query: 293 DLTRGCGRKRQCGDEGQPCGQFINKNR 213
            +  G   +        P  Q I KNR
Sbjct: 105 VILMGSNFQNDANSPLHPFAQSIIKNR 131


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +1

Query: 295 KTDTAMCSRSRTNSLMISAIVGLERTLQYIKKSSLLIAL 411
           ++D ++  + R N L +S   G ERT QYIK + L + L
Sbjct: 581 QSDGSVSEKVRLNPLKLSNFHG-ERTWQYIKPAPLAVDL 618


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 22/79 (27%), Positives = 36/79 (45%)
 Frame = +2

Query: 494 TSTMISCMMALSIAYKLISCTADSQGYT*YVCSRIR*LPARRSPINKKQLLAASKRSSLR 673
           T  + + ++ALS+AY   +  + S        S++   P RRS  N    L    +  LR
Sbjct: 103 TDPVQAAVLALSVAYAKPTSVSLSPTDL-QAQSKLIEKPRRRSASNATGSLNKKNQDPLR 161

Query: 674 QFSVPKRATPAGRSSSARN 730
           +FS+ + A  A  + S  N
Sbjct: 162 RFSISESAGAAAPTPSPSN 180


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 247 VSPAVSSSIKIEFGCFGKQHKQKKWSK 167
           +S A SS +  EF  F  +HK++ WS+
Sbjct: 297 LSDASSSDLDEEFSLFIPRHKKRVWSR 323


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 486 LLLAYLESCLGCTRHEYITCNENSPK 409
           + L+Y   C+    +  +TC ENSPK
Sbjct: 160 VFLSYATGCVNYGHNVALTCFENSPK 185


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = +1

Query: 271 RPQPRVKSKTDTAMCSRSRTNSLMISAIV 357
           +PQP++ + +DTA+ S S  N++   +++
Sbjct: 636 QPQPKISTVSDTAVPSMSFANNISSRSVI 664


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,897,763
Number of Sequences: 5004
Number of extensions: 57925
Number of successful extensions: 141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)