Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13c22
(740 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa... 36 0.006
SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc... 33 0.043
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po... 28 1.6
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 27 2.8
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha... 27 2.8
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 26 4.9
SPAC17A2.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 6.5
SPAC4G9.11c |cmb1||cytosine-mismatch binding protein 1|Schizosac... 26 6.5
SPAC21E11.03c |pcr1|mts2|transcription factor Pcr1|Schizosacchar... 25 8.6
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 25 8.6
>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 589
Score = 35.9 bits (79), Expect = 0.006
Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Frame = -2
Query: 283 KFFKEPLTNNQILDVINNITRMPILCDGPKE--DMEPLLLPLLAYIAERKNDYSIDLSSC 110
+F+K+ ++ L +I N R P++ D + + P++ + I+ D ID+++
Sbjct: 186 EFYKDSKHLSRYLHIIANSPRYPVILDAKRRVCSLPPIINSEFSKISVDTRDIFIDVTAT 245
Query: 109 DLVKYECLVTIINNIFS 59
D K E +V ++ +FS
Sbjct: 246 DKTKLEIVVNMMTTMFS 262
>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
Length = 402
Score = 33.1 bits (72), Expect = 0.043
Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = -2
Query: 274 KEPLTNNQILDVINN-ITRMPILCDGPKEDMEPLLLPLLAYIAE 146
+E L + + +V+N +TR+P+L P++++EP+L + I E
Sbjct: 41 REYLASENVKEVLNLFLTRLPLLAQAPEKELEPILAVFINLIQE 84
>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 674
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = -2
Query: 565 PGNNFLEIITGTKMRQHSSKDDITTTLIQIICSCTQEEW 449
PGN ++ G + ++I ++ +I+ +C+ EEW
Sbjct: 440 PGNVLVKFYKGIPKTIFNQDNEINDSIYKILSTCSTEEW 478
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 27.1 bits (57), Expect = 2.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 613 NTHPLNTYYYRKIWNPPGNN 554
N PL+TY+ R W+P G +
Sbjct: 219 NNSPLSTYFRRPSWSPDGKH 238
>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 27.1 bits (57), Expect = 2.8
Identities = 17/65 (26%), Positives = 32/65 (49%)
Frame = -2
Query: 412 KIVLDAYYEAMSLIARIERDNRTNNTWACILYCYRTLLHCTRYKFFKEPLTNNQILDVIN 233
K +LD + S AR E +N + T ++ + + K FK+P+T N+ D+ N
Sbjct: 361 KDMLDTVVKVFSADARFEINNESQKTGEPVVSVVKRFVSD---KIFKKPITVNEWWDLGN 417
Query: 232 NITRM 218
+ ++
Sbjct: 418 QVYKI 422
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 26.2 bits (55), Expect = 4.9
Identities = 10/33 (30%), Positives = 22/33 (66%)
Frame = -2
Query: 232 NITRMPILCDGPKEDMEPLLLPLLAYIAERKND 134
+++ +P+L + K+D+E + PL A+ E ++D
Sbjct: 708 SVSNLPLLTERDKKDLESTVDPLDAHSIEEEDD 740
>SPAC17A2.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 177
Score = 25.8 bits (54), Expect = 6.5
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = -2
Query: 286 YKFFKEPLTNNQILDVINNITRMPILCDGPKEDMEPLLLPLLAYIAERKNDYSIDLSSCD 107
Y K+ + +IL++I + + D + D + +P +A KN+Y+I + D
Sbjct: 7 YYASKDDYSTKRILEIIERPLKKLTIEDTSEYDDSDIEMPTCKRVAYYKNEYTIVVEDLD 66
>SPAC4G9.11c |cmb1||cytosine-mismatch binding protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 223
Score = 25.8 bits (54), Expect = 6.5
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Frame = -2
Query: 679 FMETYGTSIPVKEENWLKSKLKNTHPLNTYYYR----KIWNPPGNNFL----EIITGTKM 524
FMET + P + ++ + + K H + YYR + P + F+ E+ K+
Sbjct: 108 FMETLRSFTPTEIDSENRRRSKEAHSTGSRYYRLRHPDVPKKPSSAFILFYKELRNNPKL 167
Query: 523 RQHSSKDDITTTLIQ 479
RQ + +TL++
Sbjct: 168 RQELGIPEAISTLVE 182
>SPAC21E11.03c |pcr1|mts2|transcription factor
Pcr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 171
Score = 25.4 bits (53), Expect = 8.6
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = -2
Query: 706 QSTIELQTSFMETYGTSIPVKEENWLKSKLKNTHPLNTYY--YRKIWNPPGNNFLE-IIT 536
Q L++ + G VK + L + L++ + YR + PPG+N LE +++
Sbjct: 61 QEAFRLKSQLLAHQGCQCSVKIRSVLTDFQTAHNALHSQHMAYRPVQPPPGDNMLESVVS 120
Query: 535 GTKMRQHSS 509
+ + H S
Sbjct: 121 VSPTQMHPS 129
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +2
Query: 197 WSITEYRHSCDVINNI*YLIVC*WFFEEFVPGTM*KSSVTIQNACPSI 340
WS+ + C +N +V W VPGT+ + S+ + P+I
Sbjct: 440 WSVQDLLPLCQELN---IPLVLDWHHHNIVPGTLREGSLDLMPLIPTI 484
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,896,261
Number of Sequences: 5004
Number of extensions: 58257
Number of successful extensions: 189
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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