Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13c22
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0168 + 23259459-23260001,23260883-23262780,23263000-232631...    29   3.9  
02_05_0933 + 32846658-32846729,32847038-32847133,32847243-328474...    29   5.1  

>04_04_0168 + 23259459-23260001,23260883-23262780,23263000-23263150,
            23263851-23264669
          Length = 1136

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = -2

Query: 583  RKIWNPPG---NNFLEIITGTKMRQHSSKDDITTTLIQIICS 467
            ++ W+ P    +N L I   +++R+   KDD +T ++Q+ CS
Sbjct: 1094 KRFWSFPWIACDNLLAIKASSQLRRRRQKDDDSTAVVQMDCS 1135


>02_05_0933 +
           32846658-32846729,32847038-32847133,32847243-32847411,
           32847608-32847669,32848364-32849320,32850036-32850119,
           32850307-32850595,32850645-32850694
          Length = 592

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 694 ELQTSFMETYGTSIPVKEENWLKSKL 617
           ELQ +F  T+G    VK++ WLK ++
Sbjct: 238 ELQEAFRATFGRQTTVKDKLWLKRRI 263


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,803,889
Number of Sequences: 37544
Number of extensions: 309839
Number of successful extensions: 756
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)