Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13c22
         (740 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74041-7|CAA98518.2|  335|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily a...    29   4.6  
Z54238-6|CAA90999.2|  119|Caenorhabditis elegans Hypothetical pr...    28   8.0  

>Z74041-7|CAA98518.2|  335|Caenorhabditis elegans Hypothetical
           protein T03F7.4 protein.
          Length = 335

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 21  LLSVINDYYSYFLENMLFIIVTRHSYLT 104
           +LS++ DYYS    N  F+I++ H + +
Sbjct: 267 VLSIVTDYYSQMANNFSFLIMSLHGFFS 294


>AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 80 protein.
          Length = 4900

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
 Frame = -2

Query: 286  YKF--FKEPLTNNQILDVINNITRMPILCDGP-KEDMEPLLLPLLAYIAERKNDYSIDLS 116
            YKF  F E   N  +L+  +   R  ++ D   +E+ E  LL  + Y  E   DY  D S
Sbjct: 3017 YKFPSFSEKNVNEDLLNKSSWDCRDNVIVDDVIEEEDENDLLGDVTYSREVNKDYWKDSS 3076

Query: 115  SCDLVKYECL 86
            +  LV+ EC+
Sbjct: 3077 TIPLVRIECV 3086


>Z54238-6|CAA90999.2|  119|Caenorhabditis elegans Hypothetical
           protein T28C6.8 protein.
          Length = 119

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
 Frame = +2

Query: 470 TYYLYQCCCDIVFRT----VLPHL-STSYNF 547
           TYY  QC CD+V RT    +LP      YNF
Sbjct: 47  TYYCTQCQCDVVKRTETRAILPRTPGLGYNF 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,880,786
Number of Sequences: 27780
Number of extensions: 322064
Number of successful extensions: 965
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)