Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13c20
(607 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC126248-1|AAI26249.1| 254|Homo sapiens outer dense fiber of sp... 39 0.012
BC126222-1|AAI26223.1| 254|Homo sapiens outer dense fiber of sp... 39 0.012
AY713299-1|AAW83203.1| 254|Homo sapiens TISP50 protein. 39 0.012
AB067774-1|BAB70734.1| 254|Homo sapiens h-SHIPPO 1 protein. 39 0.012
BC127935-1|AAI27936.1| 241|Homo sapiens LOC440836 protein protein. 37 0.063
AK097378-1|BAC05028.1| 289|Homo sapiens protein ( Homo sapiens ... 33 1.0
BC104469-1|AAI04470.1| 289|Homo sapiens chromosome 19 open read... 32 1.8
BC104468-1|AAI04469.1| 253|Homo sapiens C19orf19 protein protein. 32 1.8
>BC126248-1|AAI26249.1| 254|Homo sapiens outer dense fiber of sperm
tails 3 protein.
Length = 254
Score = 39.1 bits (87), Expect = 0.012
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = -1
Query: 436 KSPGPAVYFQRDANVYRTKPPMYSXXXXXXXXXXXXXXXXXXAYPPNLYN-TKKNPYAYS 260
K+PGPA Y Q D V + K P Y+ A+ P TK +
Sbjct: 178 KTPGPAAYRQTDVRVTKFKAPQYTMAARVEPPGDKTLKPGPGAHSPEKVTLTKPCAPVVT 237
Query: 259 FGTKHADWAPPMII 218
FG KH+D+ P+++
Sbjct: 238 FGIKHSDYMTPLLV 251
>BC126222-1|AAI26223.1| 254|Homo sapiens outer dense fiber of sperm
tails 3 protein.
Length = 254
Score = 39.1 bits (87), Expect = 0.012
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = -1
Query: 436 KSPGPAVYFQRDANVYRTKPPMYSXXXXXXXXXXXXXXXXXXAYPPNLYN-TKKNPYAYS 260
K+PGPA Y Q D V + K P Y+ A+ P TK +
Sbjct: 178 KTPGPAAYRQTDVRVTKFKAPQYTMAARVEPPGDKTLKPGPGAHSPEKVTLTKPCAPVVT 237
Query: 259 FGTKHADWAPPMII 218
FG KH+D+ P+++
Sbjct: 238 FGIKHSDYMTPLLV 251
>AY713299-1|AAW83203.1| 254|Homo sapiens TISP50 protein.
Length = 254
Score = 39.1 bits (87), Expect = 0.012
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = -1
Query: 436 KSPGPAVYFQRDANVYRTKPPMYSXXXXXXXXXXXXXXXXXXAYPPNLYN-TKKNPYAYS 260
K+PGPA Y Q D V + K P Y+ A+ P TK +
Sbjct: 178 KTPGPAAYRQTDVRVTKFKAPQYTMAARVEPPGDKTLKPGPGAHSPEKVTLTKPCAPVVT 237
Query: 259 FGTKHADWAPPMII 218
FG KH+D+ P+++
Sbjct: 238 FGIKHSDYMTPLLV 251
>AB067774-1|BAB70734.1| 254|Homo sapiens h-SHIPPO 1 protein.
Length = 254
Score = 39.1 bits (87), Expect = 0.012
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Frame = -1
Query: 436 KSPGPAVYFQRDANVYRTKPPMYSXXXXXXXXXXXXXXXXXXAYPPNLYN-TKKNPYAYS 260
K+PGPA Y Q D V + K P Y+ A+ P TK +
Sbjct: 178 KTPGPAAYRQTDVRVTKFKAPQYTMAARVEPPGDKTLKPGPGAHSPEKVTLTKPCAPVVT 237
Query: 259 FGTKHADWAPPMII 218
FG KH+D+ P+++
Sbjct: 238 FGIKHSDYMTPLLV 251
>BC127935-1|AAI27936.1| 241|Homo sapiens LOC440836 protein protein.
Length = 241
Score = 36.7 bits (81), Expect = 0.063
Identities = 21/81 (25%), Positives = 37/81 (45%)
Frame = -1
Query: 451 FQAKAKSPGPAVYFQRDANVYRTKPPMYSXXXXXXXXXXXXXXXXXXAYPPNLYNTKKNP 272
F+ +K+PGP Y VY+++ P ++ AY N+ +K P
Sbjct: 163 FEDLSKTPGPCAYQVVSPGVYKSRAPQFTILARTSLPQDNTRKPGPAAY--NVDQHRK-P 219
Query: 271 YAYSFGTKHADWAPPMIIRED 209
+SFG +H+D+ P++ D
Sbjct: 220 RGWSFGIRHSDYLAPLVTDAD 240
>AK097378-1|BAC05028.1| 289|Homo sapiens protein ( Homo sapiens
cDNA FLJ40059 fis, clone TCOLN2000139. ).
Length = 289
Score = 32.7 bits (71), Expect = 1.0
Identities = 36/142 (25%), Positives = 54/142 (38%), Gaps = 14/142 (9%)
Frame = -1
Query: 607 ERCPPMKDPRAPAYSMXXXXXXXXXXXXXXP-NAYALKX--GS------GSPAYTMGARV 455
E+ PP++ PA+++ NAY + GS SP+YT+ R
Sbjct: 130 EKVPPVRHRTPPAFTLGCRLPLKPLDTSAPAPNAYTMPPLWGSQIFTKPSSPSYTVVGRT 189
Query: 454 GF----QAKAKSPGPAVYFQRDANVYRTKPPMYSXXXXXXXXXXXXXXXXXXAY-PPNLY 290
Q A+ PGP Y DAN YR + P ++ A+ P +
Sbjct: 190 PPARPPQDPAEIPGPGQYDSPDANTYRQRLPAFTMLGRPRAPRPLEETPGPGAHCPEQVT 249
Query: 289 NTKKNPYAYSFGTKHADWAPPM 224
K A+S G +H+ A M
Sbjct: 250 VNKARAPAFSMGIRHSKRASTM 271
>BC104469-1|AAI04470.1| 289|Homo sapiens chromosome 19 open reading
frame 19 protein.
Length = 289
Score = 31.9 bits (69), Expect = 1.8
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
Frame = -1
Query: 484 SPAYTMGARVGF----QAKAKSPGPAVYFQRDANVYRTKPPMYSXXXXXXXXXXXXXXXX 317
SP+YT+ R Q A+ PGP Y DAN YR + P ++
Sbjct: 180 SPSYTVVGRTPPARPPQDPAEIPGPGQYDSPDANTYRQRLPAFTMLGRPRAPRPLEETPG 239
Query: 316 XXAY-PPNLYNTKKNPYAYSFGTKHADWAPPM 224
A+ P + K A+S G +H+ A M
Sbjct: 240 PGAHCPEQVTVNKARAPAFSMGIRHSKRASTM 271
>BC104468-1|AAI04469.1| 253|Homo sapiens C19orf19 protein protein.
Length = 253
Score = 31.9 bits (69), Expect = 1.8
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
Frame = -1
Query: 484 SPAYTMGARVGF----QAKAKSPGPAVYFQRDANVYRTKPPMYSXXXXXXXXXXXXXXXX 317
SP+YT+ R Q A+ PGP Y DAN YR + P ++
Sbjct: 144 SPSYTVVGRTPPARPPQDPAEIPGPGQYDSPDANTYRQRLPAFTMLGRPRAPRPLEETPG 203
Query: 316 XXAY-PPNLYNTKKNPYAYSFGTKHADWAPPM 224
A+ P + K A+S G +H+ A M
Sbjct: 204 PGAHCPEQVTVNKARAPAFSMGIRHSKRASTM 235
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,865,706
Number of Sequences: 237096
Number of extensions: 1740944
Number of successful extensions: 4867
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4852
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6410414940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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