Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13c19
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p...    33   0.034
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    30   0.42 
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb...    27   2.3  
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po...    27   2.3  
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    27   3.0  
SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||...    27   3.9  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   6.9  
SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch...    26   6.9  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    25   9.1  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    25   9.1  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    25   9.1  

>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 591

 Score = 33.5 bits (73), Expect = 0.034
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = +3

Query: 588 ALNIVNGFLNSSVTSFIILFLCSIERVSFCIERLH*LAAYLQNSDSMSPPKDFNKYLI 761
           ++    G   S+VTSFI+ F  +I  + FC   L    A L N +S  P  +F  YL+
Sbjct: 335 SIKAARGIFYSTVTSFIVAFSLAILYL-FCCPDLDTFTAILYNDNSPQPFVNFYSYLL 391


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 21/50 (42%), Positives = 28/50 (56%)
 Frame = -3

Query: 397 SIFTIVTQTMLHASGRQVAVIINYLKNHIREEDFEKLHSYHELVTKFLTS 248
           S+ TI+  T+LH  GR  A +   LKN I    ++KL S  +LV   LTS
Sbjct: 583 SVLTIMKTTVLHGPGRFSAQVERMLKNQI----YDKL-SNTQLVGDLLTS 627


>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = -3

Query: 466 REKLISELENCDDPALCLHMAVLSIFTIVTQTMLHASGRQVAVIINYLKNHI 311
           ++ +  +++  D+PAL    A  +I  ++    L A G  V V ++Y KN+I
Sbjct: 56  KKVIFHQVDLLDEPALDKVFANQNISAVIHFAGLKAVGESVQVPLSYYKNNI 107


>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = -2

Query: 200 DNFKKCCSRHQEVQISFVVNSN--IVFIDSGFILCGNTRI-ALVPSLKQKW 57
           DN +  C+ H    +  ++  N  I  +DS  ILC  TRI  ++  ++++W
Sbjct: 305 DNEEYLCT-HPSASVGGILRGNLHINLLDSTVILCPKTRIKTIITYIEERW 354


>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
 Frame = -3

Query: 391 FTIVTQTMLHASGRQVAVIINYLK--NHIREEDF-EKLHSYHELVTKFLTSNGDDRTEIE 221
           FT V + + H  G +++    Y+   N+     F   + S   L+ +   SN D   EI 
Sbjct: 646 FTNVAEIISHLEGTELSFYFPYMFGINYNNASFFYTSVDSIASLIHRRWESNTDKSVEIP 705

Query: 220 DKLRSELTTLKNVVH 176
               S+  ++KNV+H
Sbjct: 706 CFQSSQRRSIKNVIH 720


>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 335

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/52 (19%), Positives = 26/52 (50%)
 Frame = -3

Query: 313 IREEDFEKLHSYHELVTKFLTSNGDDRTEIEDKLRSELTTLKNVVHDIKKYK 158
           +++E ++K ++ HE++        D    +ED     + ++  +V D+  Y+
Sbjct: 9   LKDEIYQKNYTEHEILQNAYNGKLDILLPVEDASEEAIRSITKIVQDLSFYE 60


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 763  FIKYLLKSLGGDILSEFCKYAASQCNLSMQ 674
            F  YLLK +  DI+S+F    + Q  L++Q
Sbjct: 1202 FQAYLLKEMPNDIVSQFEMLKSKQIELTVQ 1231


>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 185

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 558 NDSMLCSFIDALNIVNGFLNSSVTSFIIL 644
           N  MLC  ++A N+++  LN+    FII+
Sbjct: 100 NPYMLCEILNARNVISCSLNTQKFFFIIV 128


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
            Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = -3

Query: 295  EKLHSYHELVTKFLTSNGDDRTEIEDKLRSELTTLKNVVHDIKKY 161
            ++L  + E  +K + S   +R E+E++++ + T L  V ++  KY
Sbjct: 1026 DELVKFIEFESKQMNSVKAERIELENQIQEQRTALSEVGNNENKY 1070


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = +1

Query: 16  LIGYNAILTEKRRFHFCFKLGTNAIRVLPHSINPESIKTIFELTTKL 156
           L+G+   L    R   CF+  +++++  PH +N  ++K IF +  ++
Sbjct: 467 LLGFFTTLPGILRVFQCFRRYSDSLKSFPHLVN--ALKYIFNILAQM 511


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 241 DDRTEIEDKLRSELTTLKNVVHDIKKY 161
           D  TE ED + + L   + ++HDI++Y
Sbjct: 799 DSATESEDIVVNGLKKYRKLIHDIREY 825


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,999,985
Number of Sequences: 5004
Number of extensions: 57551
Number of successful extensions: 170
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)