Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13c19
         (774 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0808 + 7828453-7829607                                           30   1.8  
04_01_0400 + 5257505-5257655,5258588-5258772                           28   9.5  

>08_01_0808 + 7828453-7829607
          Length = 384

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = -3

Query: 454 ISELENCDDPALCLHMAVLSIFTIVTQTMLHASGRQVAVIINYLKNHIREEDFEKLHSYH 275
           +  L+   + ALC+ ++V ++ TIV     H  GR     + ++ +  R +D  +   Y 
Sbjct: 301 VEGLKTICEKALCMSLSVDNVATIVALADQHNCGRLKEACVKFIASSNRLDDVVETEGYG 360

Query: 274 ELVT 263
            L T
Sbjct: 361 RLKT 364


>04_01_0400 + 5257505-5257655,5258588-5258772
          Length = 111

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = +3

Query: 615 NSSVTSFIILFLCSI--ERVSFCIERLH 692
           N  VTSFI L  C I  +R  FC +R++
Sbjct: 70  NKGVTSFITLVACEIWKQRNDFCFQRIN 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,828,174
Number of Sequences: 37544
Number of extensions: 316375
Number of successful extensions: 697
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)