Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13c19
(774 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8666| Best HMM Match : Flagellar_rod (HMM E-Value=2.5) 79 3e-15
SB_33751| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.048
SB_1344| Best HMM Match : HGTP_anticodon (HMM E-Value=4.4) 33 0.26
SB_34460| Best HMM Match : Borrelia_orfA (HMM E-Value=0.3) 31 1.0
SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29) 31 1.4
SB_40383| Best HMM Match : IQ (HMM E-Value=0.00047) 31 1.4
SB_46217| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_35208| Best HMM Match : EGF_CA (HMM E-Value=1.2e-09) 29 4.2
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_17108| Best HMM Match : PKD (HMM E-Value=0.084) 29 5.5
SB_13548| Best HMM Match : SpoVS (HMM E-Value=7) 28 7.3
>SB_8666| Best HMM Match : Flagellar_rod (HMM E-Value=2.5)
Length = 895
Score = 79.4 bits (187), Expect = 3e-15
Identities = 49/145 (33%), Positives = 71/145 (48%), Gaps = 2/145 (1%)
Frame = -3
Query: 649 RNKIINDVTEEFKKPLTILSASINEQSMESFFQAIDVALSD--FGMILXXXXXXXXKMLV 476
R KII + EE K PLT L++S+ + E FF D+ +++ + +
Sbjct: 163 RLKIIKKMPEEIKAPLTKLNSSLTAKETEEFFAQFDLVAGQGLCELMIKKLDKKKERQIS 222
Query: 475 QNHREKLISELENCDDPALCLHMAVLSIFTIVTQTMLHASGRQVAVIINYLKNHIREEDF 296
R L +L + D+PA+ LH+AV +F T ++LHA GR V I+ L H+ E
Sbjct: 223 IERRAALQEQLRHEDEPAMTLHLAVSLLFQHFTSSLLHAPGRCVPQIVALLAEHVTPEQH 282
Query: 295 EKLHSYHELVTKFLTSNGDDRTEIE 221
E L LV K LT +G D E E
Sbjct: 283 EILLRCQSLVVKQLTRSGSDEVEEE 307
>SB_33751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 71
Score = 35.5 bits (78), Expect = 0.048
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Frame = -3
Query: 772 QAPFIKYLLKSLGGDILSEFCKYAASQCNLSMQNET-LSIEQRNKIINDVTEEFKKPLTI 596
Q ++LL+++ DI + A+ L++ +ET ++ E R KII + EE K PLT
Sbjct: 4 QVHLSRHLLRTVCTDITNLMVNMLAADHMLAVTDETTITPETRLKIIKKMPEEIKAPLTK 63
Query: 595 LSASI 581
L++S+
Sbjct: 64 LNSSL 68
>SB_1344| Best HMM Match : HGTP_anticodon (HMM E-Value=4.4)
Length = 168
Score = 33.1 bits (72), Expect = 0.26
Identities = 17/77 (22%), Positives = 38/77 (49%)
Frame = -3
Query: 394 IFTIVTQTMLHASGRQVAVIINYLKNHIREEDFEKLHSYHELVTKFLTSNGDDRTEIEDK 215
++ ++T + + + ++ + +K H E D + LV K L+ N DDR +++
Sbjct: 47 LYEVLTLKRVFDASNPLRLVSDIVKGHYEEIDERYTEEMNSLVNKLLSQNPDDRPSVQEL 106
Query: 214 LRSELTTLKNVVHDIKK 164
L E+ L + +++K
Sbjct: 107 L--EMPILATLGKEMEK 121
>SB_34460| Best HMM Match : Borrelia_orfA (HMM E-Value=0.3)
Length = 1102
Score = 31.1 bits (67), Expect = 1.0
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Frame = -3
Query: 334 INYLKNHIREE--DFEKLHSYHEL----VTKFLTSNGDDRTEIEDKLRSELTTLKNVVHD 173
I L +H++E+ EK+H+ ++ + K L ++E KL E+T LK D
Sbjct: 724 IEKLVSHVKEQVSKLEKIHNERQMTITELNKILDKVAIQHRDMESKLTGEITQLKPKEED 783
Query: 172 IKK 164
+KK
Sbjct: 784 LKK 786
>SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)
Length = 2072
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -3
Query: 325 LKNHIREEDFEKLHSYHELVTKFLTSNGDDRTEIEDKLRSELTTLKNVVHD 173
LKN I + E +L + F + ++RTE+E R E T +KN HD
Sbjct: 992 LKNEILRVEDEHEVEIRQLKSDFRERSENERTELEKSFRQERTKMKN-SHD 1041
>SB_40383| Best HMM Match : IQ (HMM E-Value=0.00047)
Length = 841
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Frame = -3
Query: 331 NYLKN-----HIREEDFEKLHSYHELVTKFLTSNGDDRTE 227
NY+KN H R+ F LHS EL T FL NG R +
Sbjct: 95 NYIKNFDALGHCRQLMFLDLHSNQELTTVFLHDNGISRLD 134
>SB_46217| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 882
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = -3
Query: 466 REKLISELENCDDPALCLHMAVLSIFTIVTQTMLHASGRQV-AVIINYLKNHIREEDFEK 290
R++ ++E E D + + S F IV +++ + + + A ++NY+K I+ E EK
Sbjct: 778 RQRGLTEREQMDSDII--RKLIKSYFVIVRKSIQDSVPKAIMAFLVNYVKERIQSELVEK 835
Query: 289 LHSYHELVT 263
L+ T
Sbjct: 836 LYKSERFET 844
>SB_35208| Best HMM Match : EGF_CA (HMM E-Value=1.2e-09)
Length = 598
Score = 29.1 bits (62), Expect = 4.2
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -2
Query: 401 VIDIHNCHSNHVTCIWQTSCC 339
+ID+ C S H C W++S C
Sbjct: 449 IIDVDECASGHHYCYWKSSTC 469
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = -3
Query: 592 SASINEQSMESFFQAIDVALSDFGMILXXXXXXXXKMLVQNHREKLISELENCDDPALCL 413
S + QS+ Q++ V G+ L + + Q+ E ++EL NCD ALC
Sbjct: 130 SLGVQPQSLGVQLQSLGVQPQSLGVQLIKTKTKQSRKIRQHIDECKVTELNNCDANALCT 189
Query: 412 HM 407
++
Sbjct: 190 NI 191
>SB_17108| Best HMM Match : PKD (HMM E-Value=0.084)
Length = 464
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -2
Query: 407 GCVIDIHNCHSNHVTCIWQTSCCYY*LFEKPHKRGRF*KITLIS*IS 267
G +D S+ C+W C + + ++ K G F K+TL S +S
Sbjct: 367 GTKLDHAYVTSSPPKCLWSAEVCNFVVTDRRKKNGGFLKVTLSSYVS 413
>SB_13548| Best HMM Match : SpoVS (HMM E-Value=7)
Length = 497
Score = 28.3 bits (60), Expect = 7.3
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = -3
Query: 274 ELVTKFLTSNG---DDRTEIEDKLRSELTTLKNVVHDIKKYK 158
E K L + G +D E+E KL +L L NV+ D KYK
Sbjct: 330 ERYDKMLATTGCTKEDLFEMEKKLEVKLVALGNVIWDSGKYK 371
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,571,132
Number of Sequences: 59808
Number of extensions: 395072
Number of successful extensions: 959
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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