Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13c19
         (774 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61947-7|AAB03137.1|  735|Caenorhabditis elegans Hypothetical pr...    39   0.003
AC025724-4|AAP31423.1|  612|Caenorhabditis elegans Hypothetical ...    32   0.40 
AC025724-3|AAG23379.2|  662|Caenorhabditis elegans Hypothetical ...    32   0.40 
U80029-15|AAB37594.2|  642|Caenorhabditis elegans Hypothetical p...    31   0.69 
Z75710-5|CAB54207.1|  240|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z73976-5|CAA98282.1|  283|Caenorhabditis elegans Hypothetical pr...    29   4.9  
AL033514-36|CAH19095.1|  222|Caenorhabditis elegans Hypothetical...    29   4.9  
AF078785-4|AAC27089.3|  609|Caenorhabditis elegans Hypothetical ...    29   4.9  
AF016654-8|AAB66025.2|  331|Caenorhabditis elegans Hypothetical ...    28   6.4  
Z48795-6|CAA88730.1|  203|Caenorhabditis elegans Hypothetical pr...    28   8.5  
AF078788-2|AAC26964.1|  311|Caenorhabditis elegans Hypothetical ...    28   8.5  

>U61947-7|AAB03137.1|  735|Caenorhabditis elegans Hypothetical protein
            C06G3.9 protein.
          Length = 735

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 43/198 (21%), Positives = 90/198 (45%), Gaps = 5/198 (2%)
 Frame = -3

Query: 757  KYLLKSLGGDILSEFCKYAASQCNLSMQNETLSIEQRNKIINDVTEEFKKPLTILSASI- 581
            +YLLK++G +I      Y     N     E    +QR + I ++ E  + P+  + AS+ 
Sbjct: 543  QYLLKTVGNEIALALLSYVMGVDNAHQLKE----KQREETIENLPEMLRDPIRSVFASLK 598

Query: 580  --NEQSMESFFQAID--VALSDFGMILXXXXXXXXKMLVQNHREKLISELENCDDPALCL 413
              ++ +++ F  A+    A S   + L          +      +L  +L +  +PA  L
Sbjct: 599  STDDDALDKFHDAVYNCSAPSATSLALKKVDKKGRAEVGAKITAELHEQLCSQTEPATTL 658

Query: 412  HMAVLSIFTIVTQTMLHASGRQVAVIINYLKNHIREEDFEKLHSYHELVTKFLTSNGDDR 233
             ++VL I     +    ASG+ V+ ++  +K+   E  F+ L +  + V   + + GD+ 
Sbjct: 659  LLSVLYILAKAGRPTT-ASGKFVSQLVAQIKDLCPENVFDLLQACQKGVVTCIKNKGDE- 716

Query: 232  TEIEDKLRSELTTLKNVV 179
               ++ L +++++LK  +
Sbjct: 717  -VAKEMLVNDISSLKQSI 733


>AC025724-4|AAP31423.1|  612|Caenorhabditis elegans Hypothetical
           protein Y67D8C.3b protein.
          Length = 612

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -3

Query: 316 HIREEDFEKLHSYHELV-TKFLTSNGDDRTEIED-KLRSELTTL 191
           H  E  +  +  Y+E V T+FL  NG   T IED  LR+ LTTL
Sbjct: 67  HTSEHGYSSVERYNEEVATRFLLGNGLPLTSIEDHDLRTFLTTL 110


>AC025724-3|AAG23379.2|  662|Caenorhabditis elegans Hypothetical
           protein Y67D8C.3a protein.
          Length = 662

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -3

Query: 316 HIREEDFEKLHSYHELV-TKFLTSNGDDRTEIED-KLRSELTTL 191
           H  E  +  +  Y+E V T+FL  NG   T IED  LR+ LTTL
Sbjct: 117 HTSEHGYSSVERYNEEVATRFLLGNGLPLTSIEDHDLRTFLTTL 160


>U80029-15|AAB37594.2|  642|Caenorhabditis elegans Hypothetical
           protein T20D4.3 protein.
          Length = 642

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
 Frame = -3

Query: 757 KYLLKSLGGDILSEFCKYAASQCNLSMQNETLSIEQR-NKIINDVTEEFKKPLTILSASI 581
           K ++K  G D   E  +YA S C     NE+L+IEQ   K+  ++T    +P+ +L   +
Sbjct: 340 KVVVKMTGMD---EITQYAGSNCTDIPINESLTIEQYVGKLYIEIT--LHRPIKVLKTDV 394

Query: 580 -NEQSMESF 557
              +S+ESF
Sbjct: 395 KGRKSVESF 403


>Z75710-5|CAB54207.1|  240|Caenorhabditis elegans Hypothetical
           protein D1081.9 protein.
          Length = 240

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = -3

Query: 733 GDILSEFCKYAASQCNLSMQNETLSIEQRNKIIN-DVTEEFKKPLTILSASINEQSMESF 557
           G +  + C  AA      +  + L +++ NK +  D+ E FK P  + S  +NE      
Sbjct: 24  GHVFCQNCTKAAFNSQCYLCKKPLKVDEINKNLRPDLMELFKDPRQLASDLVNELKQVVA 83

Query: 556 FQA 548
           FQA
Sbjct: 84  FQA 86


>Z73976-5|CAA98282.1|  283|Caenorhabditis elegans Hypothetical
           protein T07C12.9 protein.
          Length = 283

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
 Frame = -3

Query: 388 TIVTQTMLHASGRQVAVIINYLKNHIREEDFEKLHSYHELVTKFLTSN--GDDRTEIED- 218
           T+  +   +A+   + +I N     +RE D EKL       T+F T+    D  T+++D 
Sbjct: 2   TVNIEIQTNAANESLPIIQNIPTEVVRELDGEKLLDRTTFFTEFSTNAYLEDFYTKVDDP 61

Query: 217 KLRSELTTLKNVVHDIKK 164
            ++  LT L N+V  I K
Sbjct: 62  AMQMVLTFLPNIVARIGK 79


>AL033514-36|CAH19095.1|  222|Caenorhabditis elegans Hypothetical
           protein Y75B8A.39 protein.
          Length = 222

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 19/53 (35%), Positives = 30/53 (56%)
 Frame = -3

Query: 322 KNHIREEDFEKLHSYHELVTKFLTSNGDDRTEIEDKLRSELTTLKNVVHDIKK 164
           KN  RE++  KLHS   +  K    N  D  E+ DKL+ E+  L++ +H+ +K
Sbjct: 18  KNKSREKN--KLHS--AVCLKKKKQNLTDNQELCDKLQLEINILQSQIHEKEK 66


>AF078785-4|AAC27089.3|  609|Caenorhabditis elegans Hypothetical
           protein C04E12.4 protein.
          Length = 609

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = -3

Query: 766 PFIKYLLKSLGGDILSEFCKYAASQCNLSMQNETLSIEQRNKIINDVTEEFKKPLTILSA 587
           P I+ L  +  G +  E C+     CN+ ++NETL+I Q+   +  ++    K +++L  
Sbjct: 337 PGIEELTNNRAGVV--EACENIHEDCNIFLENETLTIMQQMDTLY-ISITLWKDISVLKT 393

Query: 586 SINEQS-MESF 557
            +   S +ESF
Sbjct: 394 KLKGVSNVESF 404


>AF016654-8|AAB66025.2|  331|Caenorhabditis elegans Hypothetical
           protein C17A2.1 protein.
          Length = 331

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -3

Query: 670 ETLSIEQRNKIINDVTEEFKKPLTILSASINEQSMESFFQAIDVAL 533
           ++LS+++RN   N +  E    L I+SA +   +MES FQ   + L
Sbjct: 135 KSLSLKKRNFSKNILNAESINDLLIISAHLTGSAMESCFQCPGINL 180


>Z48795-6|CAA88730.1|  203|Caenorhabditis elegans Hypothetical
           protein R05H5.7 protein.
          Length = 203

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 200 DNFKKCCSRHQEVQISFVVNSNIVFIDSGFILCGNTRI 87
           + F +C   H   Q S   +SN + IDS    CGN +I
Sbjct: 95  NGFGECRPHHTNCQQSGQCSSNQLCIDSNGYCCGNKKI 132


>AF078788-2|AAC26964.1|  311|Caenorhabditis elegans Hypothetical
           protein ZC190.5 protein.
          Length = 311

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 247 LKSKTW*LIHDMSVIFQNLPLL 312
           L+SKTW  IH+  V  Q+L +L
Sbjct: 74  LRSKTWEFIHEFGVCLQSLSML 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,596,341
Number of Sequences: 27780
Number of extensions: 323433
Number of successful extensions: 868
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)