Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13c19
         (774 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   2.4  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              23   3.2  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   3.2  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   4.2  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   5.5  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   5.5  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   7.3  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 748 LKSLGGDILSEFCKYAASQCNLSMQNETLSI 656
           +K+L  ++ S+  K    QC+LS QN+ L +
Sbjct: 44  MKTLVEELKSKPGKLVPLQCDLSNQNDILKV 74


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 555 KNDSMLCSFIDALNIVNGFLNSSVT 629
           KND  L  ++D +    GF+N+  T
Sbjct: 54  KNDEKLACYVDCMLKKVGFVNADTT 78



 Score = 21.8 bits (44), Expect = 7.3
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 325 LKNHIREEDFEKLHSYHELVTKFLTSNGDDRTEIEDKLRSELTTL 191
           +K  I +++ EKL  Y + + K +     D T  E+K R   T L
Sbjct: 47  VKKGIFDKNDEKLACYVDCMLKKVGFVNADTTFNEEKFRERTTKL 91


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
 Frame = -2

Query: 200 DNFKKCCSRHQEVQISFVVNSN----IVFIDSGFILCG 99
           DNF+    ++QE+   + +NS     I FI      CG
Sbjct: 110 DNFRNISEKYQEIFNGYFLNSESKDFIDFIQKNLQCCG 147


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 605 WFLEFLSNVIYYFVPLFN 658
           WFL  + N+I Y++ L N
Sbjct: 279 WFLHKMKNIIDYYLVLEN 296


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +1

Query: 82  NAIRVLPHSINPESIKTIFELTTKLIC 162
           N +   P +++PE+I  +    + LIC
Sbjct: 360 NIVSCSPQTVHPETIIDVSRRRSSLIC 386


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 433 HSFPTPKLISLYDF 474
           H F TP+++S +DF
Sbjct: 336 HPFGTPRIMSSFDF 349


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/43 (23%), Positives = 19/43 (44%)
 Frame = -2

Query: 683 FYAKRNSLN*TEEQNNK*RY*GIQETINNIKCVYK*TKHGIIF 555
           +Y        ++ + N   Y GIQ+  N        +K+G++F
Sbjct: 277 YYVNMEPFMKSQYEENNIEYEGIQDIFNTQSSAKVMSKNGVLF 319


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,348
Number of Sequences: 438
Number of extensions: 3976
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)