Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13c16
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.54 
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        29   0.54 
SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|...    26   3.8  
SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   5.0  

>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 28.7 bits (61), Expect = 0.54
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 467 TIALTASS-TAVCSCFYSLIYCDSYSYWFV 381
           TIALT S   A CSCF+       ++YW +
Sbjct: 265 TIALTGSKFLASCSCFFLSALFHDFAYWSI 294


>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 28.7 bits (61), Expect = 0.54
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = -2

Query: 470 NTIALTASSTAVCSC--FYSLIYCDSYSYWFVYLKLKVFLIVYCYYLSI 330
           +T++L +++  + S   FY  I C  Y Y  + LK ++F+I Y YYL I
Sbjct: 30  DTVSLVSNAPNIYSIPFFYDRI-C--YDYKNILLKYELFIIYYYYYLLI 75


>SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 385

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 431 SCFYSLIYCDSYSYWFVYLKLKVF 360
           SC Y L+ C  YSY FV  ++  F
Sbjct: 87  SCIYPLLGCRMYSYDFVGTEIDKF 110


>SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = -2

Query: 431 SCFYSLIYCDSYSYWFVYLKLKVFLIVYCYYLSIY 327
           +C+ S+++  S    F+ L   VFL+ + +Y  ++
Sbjct: 96  TCYPSILFASSLPIQFIALPPTVFLLFFKFYSRLF 130


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,537,821
Number of Sequences: 5004
Number of extensions: 24061
Number of successful extensions: 53
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)