Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13c16
         (513 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0376 + 33479776-33479958,33481055-33481236,33481345-334814...    29   2.2  
01_03_0003 + 11509530-11512772                                         28   5.1  
08_02_0775 + 21070898-21071290,21071406-21071504,21075103-210751...    27   6.7  
08_02_0502 + 17844775-17845092,17845528-17845634,17846039-178464...    27   8.8  
07_01_0488 - 3678329-3678577,3678769-3678810,3678891-3678944,367...    27   8.8  

>03_06_0376 +
           33479776-33479958,33481055-33481236,33481345-33481469,
           33481858-33482057,33482629-33482762,33483095-33483158,
           33483764-33484441,33484723-33484839
          Length = 560

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -2

Query: 476 HVNTIALTASSTAVCSCFYSLIYCDSYSYWFVYLKL-KVFLIVYCYYLSI 330
           H+ T  L   + A  SC   LIYCD Y Y  VY KL K F  +   Y+++
Sbjct: 224 HLKTF-LVPEAGAADSC---LIYCDCYMYITVYKKLTKCFWKMLLLYVNL 269


>01_03_0003 + 11509530-11512772
          Length = 1080

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +1

Query: 166  KKYKINSC*FANYNIDL*EANI*RVHVKS 252
            ++YK+N+C F+     L + N+ R+H++S
Sbjct: 1029 QRYKLNACQFSQVLYALFDCNMTRIHIRS 1057


>08_02_0775 +
           21070898-21071290,21071406-21071504,21075103-21075126,
           21076344-21076391,21076536-21076788,21076945-21077055,
           21077544-21077680,21077778-21077891,21077982-21078181,
           21078268-21078516,21078730-21078886
          Length = 594

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 437 VCSCFYSLIYCDSYSYWFVYLKLKVFLIVYCYYLSIYP 324
           + S FY ++Y     Y F++++   FLIV   Y+ + P
Sbjct: 556 ILSGFYDVLYAKKGYYIFLFIQGLAFLIVGFDYIGVCP 593


>08_02_0502 +
           17844775-17845092,17845528-17845634,17846039-17846492,
           17846623-17846694,17846804-17846925,17847079-17847294,
           17847392-17847500,17847618-17847730,17847916-17848063,
           17848274-17848396
          Length = 593

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 244 VKSH*SIYIMLTTGCSRSPLCVSA 315
           ++ +  IY+  TTG  RSP CV A
Sbjct: 380 IRKNYRIYVTCTTGYDRSPACVIA 403


>07_01_0488 -
           3678329-3678577,3678769-3678810,3678891-3678944,
           3679149-3679212,3679316-3679410,3679477-3679584,
           3679679-3679752,3680338-3680410,3680539-3680586,
           3680694-3680877,3681262-3681440,3682167-3682259,
           3682738-3682851,3683570-3683644,3683852-3684112,
           3684821-3684934,3685473-3685529,3686668-3686863,
           3686922-3686986,3687112-3687195,3688155-3688223,
           3688545-3688844
          Length = 865

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 10/22 (45%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = -2

Query: 482 GLHV-NTIALTASSTAVCSCFY 420
           G+H  +++A+TA+  A+CSC Y
Sbjct: 157 GIHSPDSLAITAAGVAICSCSY 178


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,077,878
Number of Sequences: 37544
Number of extensions: 121947
Number of successful extensions: 250
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)