Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13c16
         (513 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens ...    31   3.1  
AK128416-1|BAC87430.1|  303|Homo sapiens protein ( Homo sapiens ...    30   5.5  

>AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45488 fis, clone BRTHA2003759. ).
          Length = 130

 Score = 30.7 bits (66), Expect = 3.1
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 422 YSLIYCDSYSYWFVYLKLKVFLIVY-CYYLSIY 327
           Y  IY   Y Y F Y+ L +F+ +Y C Y+ +Y
Sbjct: 30  YVYIYLYIYFYIFTYIYLYIFIYIYICLYIYLY 62



 Score = 29.5 bits (63), Expect = 7.2
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 422 YSLIYCDSYSYWFVYLKLKVFLIVYCY-YLSIY 327
           Y  IY   Y + F+Y+ + +++ VY Y YL IY
Sbjct: 6   YVYIYMFMYIFIFIYIFIYIYIYVYVYIYLYIY 38


>AK128416-1|BAC87430.1|  303|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46559 fis, clone THYMU3040126. ).
          Length = 303

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
 Frame = -2

Query: 488 CIGLHVNTIALTASSTAVCS--CFYSLIYCDSYSYWFVYLKLKVFLIVY---CYYLSIY 327
           C+ +H+ T     + T + +  C Y  IY  +Y +  VY+ + + + ++   C Y  IY
Sbjct: 8   CVYVHIYTCIYVYTHTYIYTYTCMYVCIYSHTYIHTHVYVCVHIHICIHMYMCVYTHIY 66


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,124,340
Number of Sequences: 237096
Number of extensions: 795163
Number of successful extensions: 1891
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1875
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4820001670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)