Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13c16
         (513 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23521-2|AAC46815.2|  316|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U23521-1|ABD63220.1|  348|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z83221-6|CAB05703.3|  210|Caenorhabditis elegans Hypothetical pr...    28   4.5  

>U23521-2|AAC46815.2|  316|Caenorhabditis elegans Hypothetical
           protein F41C3.8a protein.
          Length = 316

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 410 YCDSYSYWFVYLKLKVFLIVYC 345
           YCD   YW  +     FLI YC
Sbjct: 269 YCDPTIYWSAFFACTAFLIFYC 290


>U23521-1|ABD63220.1|  348|Caenorhabditis elegans Hypothetical
           protein F41C3.8b protein.
          Length = 348

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 410 YCDSYSYWFVYLKLKVFLIVYC 345
           YCD   YW  +     FLI YC
Sbjct: 301 YCDPTIYWSAFFACTAFLIFYC 322


>Z83221-6|CAB05703.3|  210|Caenorhabditis elegans Hypothetical
           protein C49A1.10 protein.
          Length = 210

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = -2

Query: 482 GLHVNTIALTASSTAVCSCFYSL-IYCDSYSYWFVYLKLKVFLIVYCYYLSIYP*QSAET 306
           GL V  + L   + AV   F +  ++  +Y  WF+   + VF+I+    L +Y  +S E 
Sbjct: 15  GLVVAVVELFLCALAVYGLFRNFHLFGSNYFIWFLLGIISVFIILIAIALFVYAIKS-EN 73

Query: 305 QRGLREHPVVSIMYML 258
            R L  H    I  ++
Sbjct: 74  ARWLIPHLSAQIFLVI 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,488,685
Number of Sequences: 27780
Number of extensions: 132416
Number of successful extensions: 253
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)