Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13c13
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    27   2.8  
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc...    27   3.6  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    27   3.6  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    26   4.8  
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom...    26   6.4  

>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
            Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -3

Query: 357  LH*FSCKQYLHSTF*DVIEDFFIKKWEFIY 268
            L+ F  +QYL  +  D++ED  ++ WE++Y
Sbjct: 1421 LNKFHSRQYLFLSR-DLVEDLSLRVWEYVY 1449


>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 425

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 268 LVYNTIPHKPFASFYTTKTYCIHYLYVISLIYTCFGKHIF 149
           L  +T+P +   + Y T  + IH L  +S +Y   GK  F
Sbjct: 159 LARDTVPWRTAKAKYATNEFFIHVLERVSAVYQPNGKLAF 198


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 72  ITICTVRFVNYH*YVDLQKYIVKLFVNICLPKQVYI 179
           +T+  +R +    Y  L+ +++K  VNIC   ++YI
Sbjct: 343 LTLDCIRLIPTEQYYPLRLHLLKSLVNICRSTRLYI 378


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 444 VNFNCSENKHNFVSDSCFTK*YDKPV 367
           VN   S+ KH F ++S  T  YD+P+
Sbjct: 690 VNLQFSKEKHEFTAESDDTTSYDEPL 715


>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 365

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = -1

Query: 494 NF-YIVADKKNHINYIYKSILIVQKTNTILLVTPALRSSMTNQCFVDCINLVVNNIY-TQ 321
           NF ++  D   +  ++Y+ ++   + N I  +      S  ++ F+D +    NNI  TQ
Sbjct: 63  NFRFLEMDLATNYKFLYQFMVEDSEINKITHIINFAAESSVDRSFIDPLYFTKNNILSTQ 122

Query: 320 RFKMSLRIFL*KNGNL 273
                +RI L K   L
Sbjct: 123 NLLECVRILLGKKEEL 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,842,702
Number of Sequences: 5004
Number of extensions: 58147
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)