Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13c10
         (844 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   4.4  
SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ...    26   5.8  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    26   7.7  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 243  NFENCINLNREKIILQNVTNYFIENI 166
            N E C+  + E    +N+T+Y +ENI
Sbjct: 3466 NIERCVQTSIESKYYKNLTDYSLENI 3491


>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 318

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
 Frame = -2

Query: 720 STCYYRQHASSVYR----NRVISNMLRQKVQY-LLSATSVVIIFKIVLTVLK-*ELSFIT 559
           S CY+RQ+++  +R    +  +S    + + Y ++S+ S    FK   +  +   L  + 
Sbjct: 74  SCCYFRQYSTKQFRDLNTSEALSPCKAEPIPYKIMSSMSNFSDFKSRFSQYRESHLKLLN 133

Query: 558 K*FYLKTVLDLKDRITVIQSN 496
           +   +K   DLKDRI ++  N
Sbjct: 134 ELQNVKDTNDLKDRIRLLHLN 154


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 581 FKTVRTILNIITTLVAESKYC 643
           FKTV ++L +I TL+ +  YC
Sbjct: 61  FKTVYSLLKLIKTLIRKLLYC 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,044,644
Number of Sequences: 5004
Number of extensions: 57347
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)