Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13c10
         (844 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0205 - 15506167-15507576                                         36   0.053
01_06_1474 + 37630471-37631736,37631965-37632028,37632928-37633124     28   8.1  

>12_02_0205 - 15506167-15507576
          Length = 469

 Score = 35.5 bits (78), Expect = 0.053
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = -2

Query: 489 FNLKYNADGGILVVSTGPVTICHQEGYELVRSTM 388
           F+L+ N  GG+++ ST PVT   Q  Y++VR+ +
Sbjct: 314 FDLRANGTGGVILSSTTPVTYLEQAAYDVVRAAV 347


>01_06_1474 + 37630471-37631736,37631965-37632028,37632928-37633124
          Length = 508

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 489 FNLKYNADGGILVVSTGPVTICHQEGYELVRSTMHLK 379
           F+L+ +  GG+++  T PVT      Y++VR  M  K
Sbjct: 309 FDLQADGSGGVVLSITIPVTFLDAGAYKVVRQAMASK 345


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,843,008
Number of Sequences: 37544
Number of extensions: 282864
Number of successful extensions: 379
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)