Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13c10
         (844 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031627-15|CAA20966.1|  318|Caenorhabditis elegans Hypothetical...    36   0.048
AC092690-2|AAK73855.2|  745|Caenorhabditis elegans Hypothetical ...    33   0.34 
Z82276-4|CAB05241.3|  327|Caenorhabditis elegans Hypothetical pr...    32   0.44 
AF125963-1|AAD14742.1|  339|Caenorhabditis elegans Serpentine re...    30   2.4  
U64598-4|AAN72420.1|  418|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z93397-4|CAB07721.1|  363|Caenorhabditis elegans Hypothetical pr...    29   5.5  

>AL031627-15|CAA20966.1|  318|Caenorhabditis elegans Hypothetical
           protein Y102A5C.25 protein.
          Length = 318

 Score = 35.5 bits (78), Expect = 0.048
 Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
 Frame = -2

Query: 267 CELFYCVVN----FENCINLNREK-IILQNVTNYFIENIVTFEGTYILLFFGIFYYCQLL 103
           C + Y VV     + N +N  R+K I++  +TN+F + ++ +   +I   FG+F+Y  L 
Sbjct: 33  CIIIYTVVLPFYIYANKVNHERDKEILIYPITNHFYKMVIVYYLIFISTCFGVFFYPYLS 92

Query: 102 NYI*FRSILI 73
           + I   S +I
Sbjct: 93  DSIVLISFII 102


>AC092690-2|AAK73855.2|  745|Caenorhabditis elegans Hypothetical
           protein BE0003N10.1 protein.
          Length = 745

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +1

Query: 328 QPRQHYSQTILIIDSFSFQMHSRTNELITLLVTNGYRARRYNENAAISVILEVEVSIRL 504
           +PR+ +  T+ II S   + H R    +TL   NGY  +       + +  E E  I L
Sbjct: 568 RPREQFKPTVPIIQSMRIEPHKR----VTLFRNNGYNCKLIEAETGVKISAEDEAHISL 622


>Z82276-4|CAB05241.3|  327|Caenorhabditis elegans Hypothetical
           protein K03D3.4 protein.
          Length = 327

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 20/51 (39%), Positives = 29/51 (56%)
 Frame = -2

Query: 258 FYCVVNFENCINLNREKIILQNVTNYFIENIVTFEGTYILLFFGIFYYCQL 106
           FY  V+  N I  +RE ++ Q +TN+F + +V     Y+L  FGIF  C L
Sbjct: 42  FYVYVHKANNIR-DREVVVFQ-ITNHFYKCVVAMNIGYVL--FGIFVLCTL 88


>AF125963-1|AAD14742.1|  339|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 20 protein.
          Length = 339

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/45 (35%), Positives = 28/45 (62%)
 Frame = +1

Query: 373 FSFQMHSRTNELITLLVTNGYRARRYNENAAISVILEVEVSIRLY 507
           FSF +H  T+ + +LL++ GYR    + N A+S +  +++SI  Y
Sbjct: 92  FSFLLHCLTHSVWSLLISFGYRFYILH-NPALSRLTLLKISIMFY 135


>U64598-4|AAN72420.1|  418|Caenorhabditis elegans Hypothetical
           protein C52B9.3b protein.
          Length = 418

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 743 EHHIPNLKVHVIIGNMLPQFTEIELSATCF 654
           +H +P   +H II N+LP+ TE+ +S   F
Sbjct: 113 DHELPVSTLHTIILNVLPKVTELHMSDNQF 142


>Z93397-4|CAB07721.1|  363|Caenorhabditis elegans Hypothetical
           protein ZC482.7 protein.
          Length = 363

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -2

Query: 552 FYLKTVLDLKDRITVIQSN*NFNLKYNADGGILVVSTG 439
           F+L  +   +D + +IQ + N NLK    GGI+ + TG
Sbjct: 246 FHLSLICSFEDSLPLIQIHSNVNLKEAVLGGIVNLITG 283


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,518,097
Number of Sequences: 27780
Number of extensions: 318117
Number of successful extensions: 600
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)