Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13c10
         (844 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              24   2.0  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              23   4.7  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   6.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   6.2  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   6.2  

>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -3

Query: 704 GNMLPQFTEIELSATCFVKKYNTY 633
           GN+  +  +++L + C +KK+N Y
Sbjct: 50  GNIDVEDEKVQLFSECLIKKFNGY 73


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -3

Query: 680 EIELSATCFVKKYNTY 633
           +++L + C +KK+N Y
Sbjct: 58  KVQLFSECLIKKFNAY 73


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 466 WRHSRCIYGPGNHLS 422
           WR  R  YG  NH+S
Sbjct: 59  WRWIRLTYGQTNHIS 73


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 466 WRHSRCIYGPGNHLS 422
           WR  R  YG  NH+S
Sbjct: 97  WRWIRLTYGQTNHIS 111


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -1

Query: 598 SSNSFKIRIKFYNKMILFKNSV 533
           ++N++K     YNK + +KN +
Sbjct: 325 NNNNYKYNYNNYNKKLYYKNYI 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,411
Number of Sequences: 438
Number of extensions: 4268
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)