Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13c09
         (836 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch...    27   2.5  
SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown 7|Schizos...    27   4.4  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    26   5.8  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    26   7.6  

>SPAC18G6.07c |mra1||ribosome biogenesis protein
           Mra1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +2

Query: 362 IPRAKRAASNLARTLRSKLLTCSVNGYSEKLRIFTAPVITFNSPCIR 502
           IPR  +  S L   L  KL   SVNG  + L++   PV  +  P  R
Sbjct: 237 IPRTFKRFSGLMVQLLHKLSIRSVNGNEKLLKVIKNPVTDYLPPNCR 283


>SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 581

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = -3

Query: 336 EVTADRVCKANAETCILTPTISNYHEIEALDMPAAFFDILSPPYDTMIEGIGPRR 172
           +V+ +R      E  I T  + NY E ++ +    FFD   P   T  +G+  +R
Sbjct: 21  KVSIERKGDVVEEEVIATGEVENYAEPKSRNFLQRFFDDFKPALTTRGDGVALKR 75


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 183 LYLQSSYRMVVKVYQRMLQAYPR 251
           LY + +YR  +K+YQR L + P+
Sbjct: 185 LYAKGNYRSALKLYQRALVSNPQ 207


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -3

Query: 819 DIKNENQPTMEITNIPPIVSIYRHAMRTFDDNFKMDFTTN 700
           ++ N      E   +  +V + RHA RT    FK  FT++
Sbjct: 374 EVLNPPPRESEAWRLKSLVGVLRHADRTPKQKFKFSFTSD 413


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,573,979
Number of Sequences: 5004
Number of extensions: 77785
Number of successful extensions: 227
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)