Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13c09
(836 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0611 + 4541505-4541646,4543503-4543621,4543728-4543866,454... 62 7e-10
08_02_1024 - 23723560-23723693,23723835-23724041,23724183-237243... 61 1e-09
09_04_0470 + 17875119-17875239,17875327-17875496,17875637-178757... 58 1e-08
03_05_0533 - 25332015-25332145,25332231-25332449,25332595-253327... 53 3e-07
12_02_1170 - 26663491-26663602,26663999-26664104,26664613-266648... 47 2e-05
09_02_0410 - 8672855-8672970,8673062-8673265,8673618-8673768,867... 46 3e-05
08_01_0234 + 1914155-1914326,1914474-1914634,1914757-1914904,191... 45 7e-05
08_01_0230 + 1837700-1837871,1838035-1838195,1838329-1838476,183... 45 7e-05
01_05_0511 - 22831889-22832523,22833743-22833835,22834018-228342... 42 5e-04
05_07_0328 + 29286109-29286120,29286982-29287146,29288427-292885... 41 0.001
03_05_0535 + 25352283-25352562,25352661-25352788,25352928-253530... 40 0.002
04_01_0265 - 3552746-3552966,3553488-3553578 33 0.21
10_07_0091 - 12774590-12774664,12774971-12775134,12775249-127753... 31 0.86
01_01_1028 - 8145716-8145841,8145943-8145988,8146329-8146548,814... 31 1.5
05_01_0322 - 2538320-2538742,2539349-2539521,2539764-2539854,254... 30 2.0
03_06_0359 + 33373096-33373761 30 2.0
03_06_0361 + 33377781-33378458 29 3.5
09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,851... 29 4.6
09_06_0337 - 22396350-22396994 29 6.1
>01_01_0611 +
4541505-4541646,4543503-4543621,4543728-4543866,
4543924-4544178,4545094-4545212
Length = 257
Score = 61.7 bits (143), Expect = 7e-10
Identities = 52/225 (23%), Positives = 92/225 (40%), Gaps = 11/225 (4%)
Frame = -3
Query: 699 LNKLKSMMDHLKAEDFAFDNSLNDIETWRQPLKAPCTYIKVFEDYQINMSIFVLKPGFRM 520
+ ++KS++D + A D + +++ TY+ ++E ++ IF L P +
Sbjct: 40 VERIKSVLDSISAADVSLTRNMSYFRRVNSNGIPKITYLHLYECEAFSIGIFCLPPRGVI 99
Query: 519 PLHDHPRMHGLLKVITGAVNIRSFSEYPLTEQVSSLDLKVRARFEXXXXXXXXXXXXXXX 340
PLH+HP M K++ G + ++S+ ++ + + L +
Sbjct: 100 PLHNHPNMTVFSKLLFGELRVKSYDWADASQDSTGVSLFI------FVLSIDAQLQGARL 153
Query: 339 AEVTADRVCKANAETCILTPTISNYHEIEALDMPAAFFDILSPPYDTMIEGIGPRRCRYY 160
A+V D A T +L P A D+L PPYD +G G R C++Y
Sbjct: 154 AKVKVDGTLNAPCATSVLYPEDGGNLHCFTAHTACAVLDVLGPPYD---DGSG-RHCQHY 209
Query: 159 EVANVISS-----------NLVELEEIEVPKCFYCDQAPYLGPTL 58
V++ S LEE E P F+ + Y+GP +
Sbjct: 210 NVSSSAPSAGDSKPLPGDDGYAWLEECEPPDNFHLVGSTYMGPRI 254
>08_02_1024 -
23723560-23723693,23723835-23724041,23724183-23724327,
23724440-23724615,23724713-23724851
Length = 266
Score = 60.9 bits (141), Expect = 1e-09
Identities = 50/179 (27%), Positives = 75/179 (41%), Gaps = 1/179 (0%)
Frame = -3
Query: 591 TYIKVFEDYQINMSIFVLKPGFRMPLHDHPRMHGLLKVITGAVNIRSFSEYPLTEQVSSL 412
TY+ + + +M +F G +PLHDHP M L K++ G+V ++S+ S
Sbjct: 94 TYMHIHQCADFSMGVFCFPAGATLPLHDHPEMVVLSKLLYGSVRVKSYDWVTPPPPCSRK 153
Query: 411 DLKVRARFEXXXXXXXXXXXXXXXAEVTADRVCKANAETCILTPTIS-NYHEIEALDMPA 235
R V AD V A +T +L P N H A+ P
Sbjct: 154 SGLARV--------------------VAADEVRHAPCKTSVLFPRSGGNMHAFTAVT-PC 192
Query: 234 AFFDILSPPYDTMIEGIGPRRCRYYEVANVISSNLVELEEIEVPKCFYCDQAPYLGPTL 58
A D+L+PPY E +G + ++ LEE ++P+ F APY+GP L
Sbjct: 193 AILDVLTPPYS---EELGRPSTYFNDIPIPSLPGFAFLEETDLPEDFSVAGAPYVGPEL 248
>09_04_0470 +
17875119-17875239,17875327-17875496,17875637-17875784,
17876491-17876697,17877550-17877656
Length = 250
Score = 57.6 bits (133), Expect = 1e-08
Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 1/179 (0%)
Frame = -3
Query: 591 TYIKVFEDYQINMSIFVLKPGFRMPLHDHPRMHGLLKVITGAVNIRSFSEYPLTEQVSSL 412
TY+ + E ++ +F G +PLHDHP+M L K++ G++ ++S+ ++ S
Sbjct: 86 TYVHIHECDDFSIGVFCFPAGATLPLHDHPQMVVLSKLLYGSMRVKSY-DWANAPPCSGP 144
Query: 411 DLKVRARFEXXXXXXXXXXXXXXXAEVTADRVCKANAETCILTP-TISNYHEIEALDMPA 235
AR V D + +A + +L P + N H + A+ P
Sbjct: 145 RKSGLARV------------------VAVDEMREAPCKASVLFPRSGGNIHSLTAV-TPC 185
Query: 234 AFFDILSPPYDTMIEGIGPRRCRYYEVANVISSNLVELEEIEVPKCFYCDQAPYLGPTL 58
A D+L+PPY E +G + ++ LEE ++P F APY+GP L
Sbjct: 186 ALLDVLAPPY---AEDLGRPSTYFSDIPIPSLPGFAVLEEADLPDGFRVAGAPYVGPEL 241
>03_05_0533 -
25332015-25332145,25332231-25332449,25332595-25332754,
25332973-25333025,25334998-25335433
Length = 332
Score = 52.8 bits (121), Expect = 3e-07
Identities = 42/134 (31%), Positives = 62/134 (46%), Gaps = 2/134 (1%)
Frame = -3
Query: 555 MSIFVLKPGFRMPLHDHPRMHGLLKVITGAVNIRSFSEYPLTEQVSSLDLKVRARFEXXX 376
+++F L G MPLHDHP M K++ G+V+++SF + S V ++
Sbjct: 164 VAVFYLPAGTVMPLHDHPGMTVFSKLLAGSVHVQSFDWVSPSVYGSGGKRAVHSK----- 218
Query: 375 XXXXXXXXXXXXAEVTADRVCKANAETCILTP-TISNYHE-IEALDMPAAFFDILSPPYD 202
+ D V +A T +L P T N H + +D P AF D+L+PPY
Sbjct: 219 --------NTKLVKKVLDHVVEAGCGTWVLYPSTGGNLHRFVAGVDGPCAFLDVLTPPYS 270
Query: 201 TMIEGIGPRRCRYY 160
EG RRC +Y
Sbjct: 271 ---EG-RLRRCTFY 280
>12_02_1170 -
26663491-26663602,26663999-26664104,26664613-26664816,
26664914-26665076,26665196-26665317,26665702-26665969
Length = 324
Score = 47.2 bits (107), Expect = 2e-05
Identities = 54/206 (26%), Positives = 79/206 (38%), Gaps = 2/206 (0%)
Frame = -3
Query: 771 PIVSIYRHAMRTFDDNFKMDFTTNLNKLKSMMDHLKAEDFAFDNSLNDIETWRQPLKAPC 592
P+ ++R F + ++ L SM+D +K ED P
Sbjct: 58 PLQRLFRACRAVFRGTGTVPAPGEVDLLCSMLDKMKPEDVGLRADQEFFTARDDDEGIPL 117
Query: 591 TY-IKVFEDYQINMSIFVLKPGFRMPLHDHPRMHGLLKVITGAVNIRSFSEYPLTEQVSS 415
++E M IF L +PLHDHP M K++ G+++IRS Y + +
Sbjct: 118 IKNTTLYECDNFTMIIFFLPRNAIIPLHDHPGMTVFSKLLIGSLHIRS---YDWVDPEPA 174
Query: 414 LDLKVRARFEXXXXXXXXXXXXXXXAEVTADRVCKANAETCILTPTI-SNYHEIEALDMP 238
L + A+ + V A +T +L PT N H A+ P
Sbjct: 175 LSCSSSS------------GDQLRLAKRVVNGVFTAPCDTSVLYPTTGGNMHRFRAI-AP 221
Query: 237 AAFFDILSPPYDTMIEGIGPRRCRYY 160
A DIL PPY T +G R C YY
Sbjct: 222 CAILDILGPPYSTE-DG---RDCTYY 243
>09_02_0410 -
8672855-8672970,8673062-8673265,8673618-8673768,
8674060-8674119,8675019-8675024
Length = 178
Score = 46.4 bits (105), Expect = 3e-05
Identities = 49/176 (27%), Positives = 76/176 (43%), Gaps = 9/176 (5%)
Frame = -3
Query: 558 NMSIFVLKPGFRMPLHDHPRMHGLLKVITGAVNIRSFSEYPLTEQVSSLDLKVRARFEXX 379
++ IF + +PLH+HP M K++ G V+++S+ T Q+ L KVR
Sbjct: 22 SIGIFCIPASSIIPLHNHPGMTVFSKLLYGTVHVKSYDWVEDTTQLLKLS-KVRPA---- 76
Query: 378 XXXXXXXXXXXXXAEVTADRVCKANAETCILTPTIS-NYHEIEALDMPAAFFDILSPPYD 202
++ D A ++ P N H +A+ P A DILSPPY
Sbjct: 77 --------------KIVRDGEMSAPCGAMVIQPKDGGNIHAFKAIT-PCAILDILSPPYS 121
Query: 201 TMIEGIGP---RRCRYYEVANVISS-----NLVELEEIEVPKCFYCDQAPYLGPTL 58
+ +G RRCR + + ++S+ V LEE + P F + Y GP L
Sbjct: 122 SE-DGRHCSYFRRCRKADPSGILSNRSREPEFVWLEEHQPPNSFVIRRDLYKGPAL 176
>08_01_0234 +
1914155-1914326,1914474-1914634,1914757-1914904,
1915221-1915357
Length = 205
Score = 45.2 bits (102), Expect = 7e-05
Identities = 21/60 (35%), Positives = 36/60 (60%)
Frame = -3
Query: 627 IETWRQPLKAPCTYIKVFEDYQINMSIFVLKPGFRMPLHDHPRMHGLLKVITGAVNIRSF 448
+ W QP+ TY+ V+E ++ IF L +PLHDHP M L K++ G+++++S+
Sbjct: 92 VARWAQPI----TYLHVYECDAFSIGIFCLPTSAVIPLHDHPGMTVLSKLLYGSMHVKSY 147
>08_01_0230 +
1837700-1837871,1838035-1838195,1838329-1838476,
1838802-1839002,1839301-1839416,1839463-1839501
Length = 278
Score = 45.2 bits (102), Expect = 7e-05
Identities = 21/60 (35%), Positives = 36/60 (60%)
Frame = -3
Query: 627 IETWRQPLKAPCTYIKVFEDYQINMSIFVLKPGFRMPLHDHPRMHGLLKVITGAVNIRSF 448
+ W QP+ TY+ V+E ++ IF L +PLHDHP M L K++ G+++++S+
Sbjct: 92 VARWAQPI----TYLHVYECDAFSIGIFCLPTSAVIPLHDHPGMTVLSKLLYGSMHVKSY 147
>01_05_0511 -
22831889-22832523,22833743-22833835,22834018-22834215,
22834365-22834494,22834596-22834714,22835244-22835487,
22835607-22835807
Length = 539
Score = 42.3 bits (95), Expect = 5e-04
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Frame = -3
Query: 690 LKSMMDHLKAEDFAFDNSLNDIETWRQPLKAP-CTYIKVFEDYQINMS--IFVLKPGFRM 520
L ++D LK EDF D S+ P P TY+ F D +N S +F L +
Sbjct: 144 LTKLLDTLKLEDFGLDASMPYFRA--DPQGHPKVTYVH-FGDDSLNFSFGVFCLPQSAVI 200
Query: 519 PLHDHPRMHGLLKVITGAVNIRSF 448
PLHDH M K++ G+++I+S+
Sbjct: 201 PLHDHLGMTVFSKILHGSMHIKSY 224
>05_07_0328 +
29286109-29286120,29286982-29287146,29288427-29288589,
29288625-29288903,29289047-29289122,29289725-29289787,
29292116-29292164,29292413-29292504,29293017-29293068,
29293209-29293271,29293382-29293431,29293941-29294016,
29294444-29294656,29294763-29294869,29294966-29295074,
29295489-29295689,29295773-29296033,29296154-29296171,
29296287-29296397,29296755-29297030,29297108-29297382,
29297814-29298165,29298371-29298655,29298715-29299261,
29301658-29301781,29301871-29301946,29302062-29302136,
29302300-29302353,29302833-29302892,29302977-29303093,
29303228-29303361,29303480-29303682,29303879-29303976,
29304358-29304461,29304537-29304702,29304803-29304925,
29305047-29305129,29305217-29305358,29305523-29305549,
29305784-29305854,29305930-29306518
Length = 2046
Score = 40.7 bits (91), Expect = 0.001
Identities = 39/168 (23%), Positives = 67/168 (39%), Gaps = 10/168 (5%)
Frame = -3
Query: 606 LKAPCTYIKVFEDYQINMSIFVLKPGFRMPLHDHPRMHGLLKVITGAVNIRSF---SEYP 436
+ P ++ D IF L +PLH+HP M K++ G+++++S+ P
Sbjct: 43 ISPPVAAMQTLFDTSREFGIFCLPKSAVIPLHNHPGMTVFCKILFGSMHLKSYDWAKSAP 102
Query: 435 LTE----QVSSLDLKVRARF---EXXXXXXXXXXXXXXXAEVTADRVCKANAETCILTPT 277
+ + S V +F A+V D V A++ET +L P
Sbjct: 103 DNDNNALETSDATDSVLGKFIAHASFSDILFVLTTGARLAKVNTDAVFDASSETTVLYPE 162
Query: 276 ISNYHEIEALDMPAAFFDILSPPYDTMIEGIGPRRCRYYEVANVISSN 133
A D++ PPY+ +G R C YY+ + +SS+
Sbjct: 163 NGGNLHCFTARTACAVLDVMGPPYN-RADG---RDCSYYDESPYLSSS 206
>03_05_0535 +
25352283-25352562,25352661-25352788,25352928-25353081,
25353182-25353379,25353467-25353618
Length = 303
Score = 40.3 bits (90), Expect = 0.002
Identities = 42/147 (28%), Positives = 61/147 (41%), Gaps = 2/147 (1%)
Frame = -3
Query: 591 TYIKVFEDYQINMSIFVLKPGFRMPLHDHPRMHGLLKVITGAVNIRSFS-EYPLTEQVSS 415
T ++ ++ IF L P +PLH+HP M K++ G+++I+S+ P S
Sbjct: 125 TRTTIYTCTNFSIVIFFLPPTAVIPLHNHPGMTVFSKLLLGSLHIKSYDWAEPAVFAAGS 184
Query: 414 LDLKVRARFEXXXXXXXXXXXXXXXAEVTADRVCKANAETCILTPTI-SNYHEIEALDMP 238
D R R AEV D A ++T +L P N H+ A P
Sbjct: 185 GD---RLRL----------------AEVVRDGGFSAPSDTLVLYPAAGGNMHQFTAA-TP 224
Query: 237 AAFFDILSPPYDTMIEGIGPRRCRYYE 157
A D+L PPY R C YY+
Sbjct: 225 CALLDVLGPPYSE------DRDCTYYQ 245
>04_01_0265 - 3552746-3552966,3553488-3553578
Length = 103
Score = 33.5 bits (73), Expect = 0.21
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -3
Query: 300 ETCILTPTIS-NYHEIEALDMPAAFFDILSPPYDTMIEGIGPRRCRYYEVANV 145
ET IL P N H A+ P A FD+LSPPY +G R C Y+ ++V
Sbjct: 49 ETTILYPNRGGNIHTFRAIT-PCALFDVLSPPYSAE-KG---RDCSYFRKSSV 96
>10_07_0091 - 12774590-12774664,12774971-12775134,12775249-12775382,
12775463-12775556,12775650-12775758,12776055-12776103,
12778336-12778376,12779539-12779571,12779665-12779754,
12780474-12780507,12781218-12781510,12781859-12782057,
12782129-12782289,12783130-12783282,12783545-12783715,
12783822-12783921,12784023-12784111,12784192-12784290,
12784406-12784676,12784764-12784961,12785041-12785140,
12785799-12785931,12786016-12786277,12787106-12787155
Length = 1033
Score = 31.5 bits (68), Expect = 0.86
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Frame = +1
Query: 544 ENAHIYLIVFKHFNVRTWGFK-----RLPPCLDIVEAII 645
E AH+ FKHF + TW FK L P +D++E+I+
Sbjct: 993 EEAHLNTC-FKHFTLFTWEFKLIDKAELAPLIDLIESIV 1030
>01_01_1028 -
8145716-8145841,8145943-8145988,8146329-8146548,
8146832-8146955
Length = 171
Score = 30.7 bits (66), Expect = 1.5
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Frame = -3
Query: 594 CTYI--KVFEDYQINMSI---FVLKPGFRMPLHDHPRMHGLLKVITG 469
C Y+ + + +N+SI F+L PG R+P H HP + TG
Sbjct: 18 CMYVILAIIGGWAVNISIDRGFILGPGLRLPAHFHPMFFPIGNWATG 64
>05_01_0322 -
2538320-2538742,2539349-2539521,2539764-2539854,
2540005-2540121,2540327-2540392,2540933-2541025,
2541661-2541721,2542634-2542707,2542782-2542848,
2543342-2543400
Length = 407
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 797 QPWKLLTYRLLYQYTGTQCAPLMTISKWISR 705
Q W L + LL+ Y G C + + KW+SR
Sbjct: 93 QKWGFLIW-LLFSYCGLACIACVAVGKWLSR 122
>03_06_0359 + 33373096-33373761
Length = 221
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -3
Query: 540 LKPGFRMPLHDHPRMHGLLKVITG 469
L PG PLH HPR L+ VITG
Sbjct: 104 LAPGGVNPLHSHPRAAELVHVITG 127
>03_06_0361 + 33377781-33378458
Length = 225
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -3
Query: 540 LKPGFRMPLHDHPRMHGLLKVITGAV 463
L PG PLH HPR L+ V+ G V
Sbjct: 110 LAPGGVNPLHSHPRATELIHVVAGRV 135
>09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,
8511209-8511523,8511576-8511682,8512559-8512629,
8512952-8513029,8513390-8513454,8514224-8514274,
8514373-8514414,8514785-8515105,8515154-8517880
Length = 1480
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 135 NLVELEEIEVPKCFYCDQAPYLG 67
+L L+E+E+ KC+Y D P LG
Sbjct: 1278 SLFSLQELELCKCYYTDHLPPLG 1300
>09_06_0337 - 22396350-22396994
Length = 214
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = -3
Query: 603 KAPCTYIKVFEDYQINMSIFVLKPGFRMPLHDHPRMHGLLKVITGAVNI 457
KA ++ + V P P H HPR LL V+ GA+++
Sbjct: 74 KATMAEFPALNGQSVSYATLVFPPSTVNPPHTHPRSAELLLVVDGALSV 122
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,730,122
Number of Sequences: 37544
Number of extensions: 487875
Number of successful extensions: 1198
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1193
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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