Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13c09
(836 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC067740-1|AAH67740.2| 270|Homo sapiens chromosome 10 open read... 112 2e-24
BC028589-1|AAH28589.2| 270|Homo sapiens chromosome 10 open read... 112 2e-24
BC018660-1|AAH18660.3| 270|Homo sapiens chromosome 10 open read... 112 2e-24
AL133417-1|CAH73826.2| 270|Homo sapiens chromosome 10 open read... 112 2e-24
AK027453-1|BAB55123.1| 228|Homo sapiens protein ( Homo sapiens ... 112 2e-24
DQ005958-1|AAY27747.1| 620|Homo sapiens membralin protein protein. 31 5.2
BC027589-1|AAH27589.1| 411|Homo sapiens LRRC6 protein protein. 31 5.2
AK090400-1|BAC03381.1| 357|Homo sapiens FLJ00277 protein protein. 31 5.2
AC004528-3|AAC12681.1| 529|Homo sapiens R32184_3 protein. 31 5.2
BC047286-1|AAH47286.1| 466|Homo sapiens leucine rich repeat con... 30 9.0
>BC067740-1|AAH67740.2| 270|Homo sapiens chromosome 10 open reading
frame 22 protein.
Length = 270
Score = 112 bits (269), Expect = 2e-24
Identities = 77/227 (33%), Positives = 111/227 (48%), Gaps = 11/227 (4%)
Frame = -3
Query: 711 FTTNLNKLKSMMDHLKAEDFAFDNSLNDIETWRQPLKAPCTYIKVFEDYQINMSIFVLKP 532
F NL+KLKS++ L+AED ++ P P TY+ ++E ++ +F+LK
Sbjct: 47 FPENLSKLKSLLTQLRAEDLNIAPRKATLQPL-PPNLPPVTYMHIYETDGFSLGVFLLKS 105
Query: 531 GFRMPLHDHPRMHGLLKVITGAVNIRSFSEYPLTEQVSSLDLKVRARFEXXXXXXXXXXX 352
G +PLHDHP MHG+LKV+ G V I + L +FE
Sbjct: 106 GTSIPLHDHPGMHGMLKVLYGTVRISCMDKLDAGGGQRPRALPPEQQFEPPLQPREREAV 165
Query: 351 XXXXAEVTADRVCKANAETCILTPTISNYHEIEALDMPAAFFDILSPPYDTMIEGIGPRR 172
A+ +A+ CILTP N H+I+A++ PAAF DIL+PPYD +G R
Sbjct: 166 RPGVLRSRAE-YTEASG-PCILTPHRDNLHQIDAVEGPAAFLDILAPPYDP-DDG---RD 219
Query: 171 CRYYEVANVI-----SSNLVELEE----IEVPKC--FYCDQAPYLGP 64
C YY V + SS+ +L +E P+ F+C+ PY GP
Sbjct: 220 CHYYRVLEPVRPKEASSSACDLPREVWLLETPQADDFWCEGEPYPGP 266
>BC028589-1|AAH28589.2| 270|Homo sapiens chromosome 10 open reading
frame 22 protein.
Length = 270
Score = 112 bits (269), Expect = 2e-24
Identities = 77/227 (33%), Positives = 111/227 (48%), Gaps = 11/227 (4%)
Frame = -3
Query: 711 FTTNLNKLKSMMDHLKAEDFAFDNSLNDIETWRQPLKAPCTYIKVFEDYQINMSIFVLKP 532
F NL+KLKS++ L+AED ++ P P TY+ ++E ++ +F+LK
Sbjct: 47 FPENLSKLKSLLTQLRAEDLNIAPRKATLQPL-PPNLPPVTYMHIYETDGFSLGVFLLKS 105
Query: 531 GFRMPLHDHPRMHGLLKVITGAVNIRSFSEYPLTEQVSSLDLKVRARFEXXXXXXXXXXX 352
G +PLHDHP MHG+LKV+ G V I + L +FE
Sbjct: 106 GTSIPLHDHPGMHGMLKVLYGTVRISCMDKLDAGGGQRPRALPPEQQFEPPLQPREREAV 165
Query: 351 XXXXAEVTADRVCKANAETCILTPTISNYHEIEALDMPAAFFDILSPPYDTMIEGIGPRR 172
A+ +A+ CILTP N H+I+A++ PAAF DIL+PPYD +G R
Sbjct: 166 RPGVLRSRAE-YTEASG-PCILTPHRDNLHQIDAVEGPAAFLDILAPPYDP-DDG---RD 219
Query: 171 CRYYEVANVI-----SSNLVELEE----IEVPKC--FYCDQAPYLGP 64
C YY V + SS+ +L +E P+ F+C+ PY GP
Sbjct: 220 CHYYRVLEPVRPKEASSSACDLPREVWLLETPQADDFWCEGEPYPGP 266
>BC018660-1|AAH18660.3| 270|Homo sapiens chromosome 10 open reading
frame 22 protein.
Length = 270
Score = 112 bits (269), Expect = 2e-24
Identities = 77/227 (33%), Positives = 111/227 (48%), Gaps = 11/227 (4%)
Frame = -3
Query: 711 FTTNLNKLKSMMDHLKAEDFAFDNSLNDIETWRQPLKAPCTYIKVFEDYQINMSIFVLKP 532
F NL+KLKS++ L+AED ++ P P TY+ ++E ++ +F+LK
Sbjct: 47 FPENLSKLKSLLTQLRAEDLNIAPRKATLQPL-PPNLPPVTYMHIYETDGFSLGVFLLKS 105
Query: 531 GFRMPLHDHPRMHGLLKVITGAVNIRSFSEYPLTEQVSSLDLKVRARFEXXXXXXXXXXX 352
G +PLHDHP MHG+LKV+ G V I + L +FE
Sbjct: 106 GTSIPLHDHPGMHGMLKVLYGTVRISCMDKLDAGGGQRPRALPPEQQFEPPLQPREREAV 165
Query: 351 XXXXAEVTADRVCKANAETCILTPTISNYHEIEALDMPAAFFDILSPPYDTMIEGIGPRR 172
A+ +A+ CILTP N H+I+A++ PAAF DIL+PPYD +G R
Sbjct: 166 RPGVLRSRAE-YTEASG-PCILTPHRDNLHQIDAVEGPAAFLDILAPPYDP-DDG---RD 219
Query: 171 CRYYEVANVI-----SSNLVELEE----IEVPKC--FYCDQAPYLGP 64
C YY V + SS+ +L +E P+ F+C+ PY GP
Sbjct: 220 CHYYRVLEPVRPKEASSSACDLPREVWLLETPQADDFWCEGEPYPGP 266
>AL133417-1|CAH73826.2| 270|Homo sapiens chromosome 10 open reading
frame 22 protein.
Length = 270
Score = 112 bits (269), Expect = 2e-24
Identities = 77/227 (33%), Positives = 111/227 (48%), Gaps = 11/227 (4%)
Frame = -3
Query: 711 FTTNLNKLKSMMDHLKAEDFAFDNSLNDIETWRQPLKAPCTYIKVFEDYQINMSIFVLKP 532
F NL+KLKS++ L+AED ++ P P TY+ ++E ++ +F+LK
Sbjct: 47 FPENLSKLKSLLTQLRAEDLNIAPRKATLQPL-PPNLPPVTYMHIYETDGFSLGVFLLKS 105
Query: 531 GFRMPLHDHPRMHGLLKVITGAVNIRSFSEYPLTEQVSSLDLKVRARFEXXXXXXXXXXX 352
G +PLHDHP MHG+LKV+ G V I + L +FE
Sbjct: 106 GTSIPLHDHPGMHGMLKVLYGTVRISCMDKLDAGGGQRPRALPPEQQFEPPLQPREREAV 165
Query: 351 XXXXAEVTADRVCKANAETCILTPTISNYHEIEALDMPAAFFDILSPPYDTMIEGIGPRR 172
A+ +A+ CILTP N H+I+A++ PAAF DIL+PPYD +G R
Sbjct: 166 RPGVLRSRAE-YTEASG-PCILTPHRDNLHQIDAVEGPAAFLDILAPPYDP-DDG---RD 219
Query: 171 CRYYEVANVI-----SSNLVELEE----IEVPKC--FYCDQAPYLGP 64
C YY V + SS+ +L +E P+ F+C+ PY GP
Sbjct: 220 CHYYRVLEPVRPKEASSSACDLPREVWLLETPQADDFWCEGEPYPGP 266
>AK027453-1|BAB55123.1| 228|Homo sapiens protein ( Homo sapiens
cDNA FLJ14547 fis, clone NT2RM2001637. ).
Length = 228
Score = 112 bits (269), Expect = 2e-24
Identities = 77/227 (33%), Positives = 111/227 (48%), Gaps = 11/227 (4%)
Frame = -3
Query: 711 FTTNLNKLKSMMDHLKAEDFAFDNSLNDIETWRQPLKAPCTYIKVFEDYQINMSIFVLKP 532
F NL+KLKS++ L+AED ++ P P TY+ ++E ++ +F+LK
Sbjct: 5 FPENLSKLKSLLTQLRAEDLNIAPRKATLQPL-PPNLPPVTYMHIYETDGFSLGVFLLKS 63
Query: 531 GFRMPLHDHPRMHGLLKVITGAVNIRSFSEYPLTEQVSSLDLKVRARFEXXXXXXXXXXX 352
G +PLHDHP MHG+LKV+ G V I + L +FE
Sbjct: 64 GTSIPLHDHPGMHGMLKVLYGTVRISCMDKLDAGGGQRPRALPPEQQFEPPLQPREREAV 123
Query: 351 XXXXAEVTADRVCKANAETCILTPTISNYHEIEALDMPAAFFDILSPPYDTMIEGIGPRR 172
A+ +A+ CILTP N H+I+A++ PAAF DIL+PPYD +G R
Sbjct: 124 RPGVLRSRAE-YTEASG-PCILTPHRDNLHQIDAVEGPAAFLDILAPPYDP-DDG---RD 177
Query: 171 CRYYEVANVI-----SSNLVELEE----IEVPKC--FYCDQAPYLGP 64
C YY V + SS+ +L +E P+ F+C+ PY GP
Sbjct: 178 CHYYRVLEPVRPKEASSSACDLPREVWLLETPQADDFWCEGEPYPGP 224
>DQ005958-1|AAY27747.1| 620|Homo sapiens membralin protein protein.
Length = 620
Score = 31.1 bits (67), Expect = 5.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 278 QYQITTKSRPWICLQHSLIYFHHH 207
QY W+ +QHS+IYF HH
Sbjct: 425 QYSSLALVTSWLFIQHSMIYFFHH 448
>BC027589-1|AAH27589.1| 411|Homo sapiens LRRC6 protein protein.
Length = 411
Score = 31.1 bits (67), Expect = 5.2
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Frame = -3
Query: 735 FDDNFKMDFTTNLNKLKSMMDHLKAEDFA------FDNSLNDIETWRQP 607
FD + D L+ L+S DHL+A D DNS +D+E W +P
Sbjct: 206 FDGRWYTDINATLSSLESK-DHLQAPDIEEHNTKKLDNSEDDLEFWNKP 253
>AK090400-1|BAC03381.1| 357|Homo sapiens FLJ00277 protein protein.
Length = 357
Score = 31.1 bits (67), Expect = 5.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 278 QYQITTKSRPWICLQHSLIYFHHH 207
QY W+ +QHS+IYF HH
Sbjct: 162 QYSSLALVTSWLFIQHSMIYFFHH 185
>AC004528-3|AAC12681.1| 529|Homo sapiens R32184_3 protein.
Length = 529
Score = 31.1 bits (67), Expect = 5.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 278 QYQITTKSRPWICLQHSLIYFHHH 207
QY W+ +QHS+IYF HH
Sbjct: 425 QYSSLALVTSWLFIQHSMIYFFHH 448
>BC047286-1|AAH47286.1| 466|Homo sapiens leucine rich repeat
containing 6 protein.
Length = 466
Score = 30.3 bits (65), Expect = 9.0
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Frame = -3
Query: 735 FDDNFKMDFTTNLNKLKSMMDHLKAEDFA------FDNSLNDIETWRQP 607
FD + D L+ L+S DHL+A D DNS +D+E W +P
Sbjct: 206 FDGRWYTDINATLSSLESK-DHLQAPDTEEHNTKKLDNSEDDLEFWNKP 253
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,643,971
Number of Sequences: 237096
Number of extensions: 2832897
Number of successful extensions: 13459
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13454
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10538170902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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