Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13c09
(836 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT023322-1|AAY55738.1| 240|Drosophila melanogaster IP10160p pro... 113 3e-25
AE014296-1374|AAF50485.1| 240|Drosophila melanogaster CG7550-PA... 113 3e-25
AY113513-1|AAM29518.1| 414|Drosophila melanogaster RE59473p pro... 31 2.6
AF247183-1|AAG18016.1| 414|Drosophila melanogaster BVES protein. 31 2.6
AE014298-3082|AAS65416.1| 414|Drosophila melanogaster CG32513-P... 31 2.6
AE014298-3081|AAF50859.2| 414|Drosophila melanogaster CG32513-P... 31 2.6
AY094789-1|AAM11142.1| 1593|Drosophila melanogaster LD15472p pro... 29 6.0
AE014135-149|AAF59405.4| 2874|Drosophila melanogaster CG2999-PC,... 29 6.0
AE014135-148|AAN06592.1| 2871|Drosophila melanogaster CG2999-PA,... 29 6.0
BT024236-1|ABC86298.1| 959|Drosophila melanogaster LD10772p pro... 29 7.9
AY119108-1|AAM50968.1| 647|Drosophila melanogaster RE09079p pro... 29 7.9
AE014297-360|AAF51949.1| 959|Drosophila melanogaster CG10979-PA... 29 7.9
>BT023322-1|AAY55738.1| 240|Drosophila melanogaster IP10160p
protein.
Length = 240
Score = 113 bits (272), Expect = 3e-25
Identities = 73/228 (32%), Positives = 108/228 (47%), Gaps = 2/228 (0%)
Frame = -3
Query: 762 SIYRHAMRTFDDNFKMDFTTNLNKLKSMMDHLKAEDFAFDNSL-NDIETWRQPLKAPCTY 586
++ R A +TFD F NL L+ + D L D L ++ + R APC+Y
Sbjct: 7 NVLRQAFKTFDRANHASFNANLQHLRQLTDELTYRDLHLREELFRNVGSHR----APCSY 62
Query: 585 IKVFEDYQINMSIFVLKPGFRMPLHDHPRMHGLLKVITGAVNIRSFSEYPLTEQVSSLDL 406
+ +FED + +MS+F+++ +PLHDHP M GLL+ I G + + SFS ++ + D
Sbjct: 63 MHIFEDDRFSMSLFIVRGASTIPLHDHPMMFGLLRCIWGQLMVDSFSHQLGPDEPLTYD- 121
Query: 405 KVRARFEXXXXXXXXXXXXXXXAEVTADRVCKANAETCILTPTISNYHEIEALDM-PAAF 229
V ++ + LTP NYH+I + AAF
Sbjct: 122 ---------------PHQTVVKVNVEEPKLVTPASPCATLTPRKRNYHQIAQIGSGVAAF 166
Query: 228 FDILSPPYDTMIEGIGPRRCRYYEVANVISSNLVELEEIEVPKCFYCD 85
FDILSPPYD + GPR+CR+Y + V+L I P +YCD
Sbjct: 167 FDILSPPYDADMPTYGPRQCRFYRA--TAEGSQVQLHCIPSPDTYYCD 212
>AE014296-1374|AAF50485.1| 240|Drosophila melanogaster CG7550-PA
protein.
Length = 240
Score = 113 bits (272), Expect = 3e-25
Identities = 73/228 (32%), Positives = 108/228 (47%), Gaps = 2/228 (0%)
Frame = -3
Query: 762 SIYRHAMRTFDDNFKMDFTTNLNKLKSMMDHLKAEDFAFDNSL-NDIETWRQPLKAPCTY 586
++ R A +TFD F NL L+ + D L D L ++ + R APC+Y
Sbjct: 7 NVLRQAFKTFDRANHASFNANLQHLRQLTDELTYRDLHLREELFRNVGSHR----APCSY 62
Query: 585 IKVFEDYQINMSIFVLKPGFRMPLHDHPRMHGLLKVITGAVNIRSFSEYPLTEQVSSLDL 406
+ +FED + +MS+F+++ +PLHDHP M GLL+ I G + + SFS ++ + D
Sbjct: 63 MHIFEDDRFSMSLFIVRGASTIPLHDHPMMFGLLRCIWGQLMVDSFSHQLGPDEPLTYD- 121
Query: 405 KVRARFEXXXXXXXXXXXXXXXAEVTADRVCKANAETCILTPTISNYHEIEALDM-PAAF 229
V ++ + LTP NYH+I + AAF
Sbjct: 122 ---------------PHQTVVKVNVEEPKLVTPASPCATLTPRKRNYHQIAQIGSGVAAF 166
Query: 228 FDILSPPYDTMIEGIGPRRCRYYEVANVISSNLVELEEIEVPKCFYCD 85
FDILSPPYD + GPR+CR+Y + V+L I P +YCD
Sbjct: 167 FDILSPPYDADMPTYGPRQCRFYRA--TAEGSQVQLHCIPSPDTYYCD 212
>AY113513-1|AAM29518.1| 414|Drosophila melanogaster RE59473p
protein.
Length = 414
Score = 30.7 bits (66), Expect = 2.6
Identities = 15/57 (26%), Positives = 31/57 (54%)
Frame = +1
Query: 505 VIVERHSKTRF*HENAHIYLIVFKHFNVRTWGFKRLPPCLDIVEAIIECEIFSFEVI 675
V++ R RF E +YL +F+ +V FK++ C+ ++ A+ E+++ E +
Sbjct: 167 VVLCRLRPVRFEQEIEAVYLALFQPLHVTRHQFKKVLNCMKVIRALKYQEVYAQEKV 223
>AF247183-1|AAG18016.1| 414|Drosophila melanogaster BVES protein.
Length = 414
Score = 30.7 bits (66), Expect = 2.6
Identities = 15/57 (26%), Positives = 31/57 (54%)
Frame = +1
Query: 505 VIVERHSKTRF*HENAHIYLIVFKHFNVRTWGFKRLPPCLDIVEAIIECEIFSFEVI 675
V++ R RF E +YL +F+ +V FK++ C+ ++ A+ E+++ E +
Sbjct: 167 VVLCRLRPVRFEQEIEAVYLALFQPLHVTRHQFKKVLNCMKVIRALKYQEVYAQEKV 223
>AE014298-3082|AAS65416.1| 414|Drosophila melanogaster CG32513-PB,
isoform B protein.
Length = 414
Score = 30.7 bits (66), Expect = 2.6
Identities = 15/57 (26%), Positives = 31/57 (54%)
Frame = +1
Query: 505 VIVERHSKTRF*HENAHIYLIVFKHFNVRTWGFKRLPPCLDIVEAIIECEIFSFEVI 675
V++ R RF E +YL +F+ +V FK++ C+ ++ A+ E+++ E +
Sbjct: 167 VVLCRLRPVRFEQEIEAVYLALFQPLHVTRHQFKKVLNCMKVIRALKYQEVYAQEKV 223
>AE014298-3081|AAF50859.2| 414|Drosophila melanogaster CG32513-PA,
isoform A protein.
Length = 414
Score = 30.7 bits (66), Expect = 2.6
Identities = 15/57 (26%), Positives = 31/57 (54%)
Frame = +1
Query: 505 VIVERHSKTRF*HENAHIYLIVFKHFNVRTWGFKRLPPCLDIVEAIIECEIFSFEVI 675
V++ R RF E +YL +F+ +V FK++ C+ ++ A+ E+++ E +
Sbjct: 167 VVLCRLRPVRFEQEIEAVYLALFQPLHVTRHQFKKVLNCMKVIRALKYQEVYAQEKV 223
>AY094789-1|AAM11142.1| 1593|Drosophila melanogaster LD15472p protein.
Length = 1593
Score = 29.5 bits (63), Expect = 6.0
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -3
Query: 735 FDDNFKMDFTTNLNKLKSMMDHLKAED--FAFDNSLNDIE 622
FDD F F ++ +L + +DH+ ED + F N +E
Sbjct: 897 FDDTFYDSFNVDIKELTAFVDHVAPEDGLYNFPNDKTSVE 936
>AE014135-149|AAF59405.4| 2874|Drosophila melanogaster CG2999-PC,
isoform C protein.
Length = 2874
Score = 29.5 bits (63), Expect = 6.0
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -3
Query: 735 FDDNFKMDFTTNLNKLKSMMDHLKAED--FAFDNSLNDIE 622
FDD F F ++ +L + +DH+ ED + F N +E
Sbjct: 897 FDDTFYDSFNVDIKELTAFVDHVAPEDGLYNFPNDKTSVE 936
>AE014135-148|AAN06592.1| 2871|Drosophila melanogaster CG2999-PA,
isoform A protein.
Length = 2871
Score = 29.5 bits (63), Expect = 6.0
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -3
Query: 735 FDDNFKMDFTTNLNKLKSMMDHLKAED--FAFDNSLNDIE 622
FDD F F ++ +L + +DH+ ED + F N +E
Sbjct: 897 FDDTFYDSFNVDIKELTAFVDHVAPEDGLYNFPNDKTSVE 936
>BT024236-1|ABC86298.1| 959|Drosophila melanogaster LD10772p
protein.
Length = 959
Score = 29.1 bits (62), Expect = 7.9
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 480 LSIVHAYEGDRGEAFENQVLTRKCSYLSDSL 572
L H EGDR + E V T +C Y D +
Sbjct: 568 LGFTHKIEGDRDQLTEQYVSTHECEYSRDDV 598
>AY119108-1|AAM50968.1| 647|Drosophila melanogaster RE09079p
protein.
Length = 647
Score = 29.1 bits (62), Expect = 7.9
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 480 LSIVHAYEGDRGEAFENQVLTRKCSYLSDSL 572
L H EGDR + E V T +C Y D +
Sbjct: 256 LGFTHKIEGDRDQLTEQYVSTHECEYSRDDV 286
>AE014297-360|AAF51949.1| 959|Drosophila melanogaster CG10979-PA
protein.
Length = 959
Score = 29.1 bits (62), Expect = 7.9
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 480 LSIVHAYEGDRGEAFENQVLTRKCSYLSDSL 572
L H EGDR + E V T +C Y D +
Sbjct: 568 LGFTHKIEGDRDQLTEQYVSTHECEYSRDDV 598
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,182,006
Number of Sequences: 53049
Number of extensions: 842138
Number of successful extensions: 1786
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1784
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3983256888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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