Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13c09
         (836 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025722-3|AAN73848.1|  184|Caenorhabditis elegans Hypothetical ...    53   2e-07
Z96100-3|CAD60418.1|  893|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z96100-2|CAD60417.1|  912|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z96100-1|CAB09530.2|  964|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AY150817-1|AAN61051.1|  893|Caenorhabditis elegans ADR-1E protein.     28   7.2  
AY150816-1|AAN61050.1|  912|Caenorhabditis elegans ADR-1D protein.     28   7.2  
AY150815-1|AAN61049.1|  964|Caenorhabditis elegans ADR-1C protein.     28   7.2  
U52003-1|AAG00054.1|  503|Caenorhabditis elegans Hypothetical pr...    28   9.5  

>AC025722-3|AAN73848.1|  184|Caenorhabditis elegans Hypothetical
           protein Y50D4C.6 protein.
          Length = 184

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 23/49 (46%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
 Frame = -3

Query: 588 YIKVFEDYQINMSIF-VLKPGFRMPLHDHPRMHGLLKVITGAVNIRSFS 445
           Y  V++D   +++ F +LK G ++PLHDHP  H ++KV  G+V IRSFS
Sbjct: 68  YADVYQDDYCHVNTFGLLKSGLKIPLHDHPNQHAVMKVYQGSVKIRSFS 116


>Z96100-3|CAD60418.1|  893|Caenorhabditis elegans Hypothetical
           protein H15N14.1e protein.
          Length = 893

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -1

Query: 656 ISHSIIASTISRHGGSRLKPHVRTLKCLKTIR*I*AFSC*NLVFEC 519
           +SH+ I +   RH  +RL      L+CL TI  I   +C  L  EC
Sbjct: 340 VSHADITTVARRHASNRLGHDTTILQCLNTICSI--LNC-TLTIEC 382


>Z96100-2|CAD60417.1|  912|Caenorhabditis elegans Hypothetical
           protein H15N14.1d protein.
          Length = 912

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -1

Query: 656 ISHSIIASTISRHGGSRLKPHVRTLKCLKTIR*I*AFSC*NLVFEC 519
           +SH+ I +   RH  +RL      L+CL TI  I   +C  L  EC
Sbjct: 340 VSHADITTVARRHASNRLGHDTTILQCLNTICSI--LNC-TLTIEC 382


>Z96100-1|CAB09530.2|  964|Caenorhabditis elegans Hypothetical
           protein H15N14.1c protein.
          Length = 964

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -1

Query: 656 ISHSIIASTISRHGGSRLKPHVRTLKCLKTIR*I*AFSC*NLVFEC 519
           +SH+ I +   RH  +RL      L+CL TI  I   +C  L  EC
Sbjct: 411 VSHADITTVARRHASNRLGHDTTILQCLNTICSI--LNC-TLTIEC 453


>AY150817-1|AAN61051.1|  893|Caenorhabditis elegans ADR-1E protein.
          Length = 893

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -1

Query: 656 ISHSIIASTISRHGGSRLKPHVRTLKCLKTIR*I*AFSC*NLVFEC 519
           +SH+ I +   RH  +RL      L+CL TI  I   +C  L  EC
Sbjct: 340 VSHADITTVARRHASNRLGHDTTILQCLNTICSI--LNC-TLTIEC 382


>AY150816-1|AAN61050.1|  912|Caenorhabditis elegans ADR-1D protein.
          Length = 912

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -1

Query: 656 ISHSIIASTISRHGGSRLKPHVRTLKCLKTIR*I*AFSC*NLVFEC 519
           +SH+ I +   RH  +RL      L+CL TI  I   +C  L  EC
Sbjct: 340 VSHADITTVARRHASNRLGHDTTILQCLNTICSI--LNC-TLTIEC 382


>AY150815-1|AAN61049.1|  964|Caenorhabditis elegans ADR-1C protein.
          Length = 964

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -1

Query: 656 ISHSIIASTISRHGGSRLKPHVRTLKCLKTIR*I*AFSC*NLVFEC 519
           +SH+ I +   RH  +RL      L+CL TI  I   +C  L  EC
Sbjct: 411 VSHADITTVARRHASNRLGHDTTILQCLNTICSI--LNC-TLTIEC 453


>U52003-1|AAG00054.1|  503|Caenorhabditis elegans Hypothetical
           protein ZK381.2 protein.
          Length = 503

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = -3

Query: 204 DTMIEGIGPRRCRYYEVANVISSNLVELEEIEVPKCFYCDQAPYLGPTLA*IQIHLNLGS 25
           DT +  IG RRC         ++++ +L + E  KC + D   Y GP +  +  H    S
Sbjct: 442 DTFVTKIGVRRCP--------NADICDLPQREDYKCIHSDAQYYSGPDMQPVTYHFTTDS 493


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,542,042
Number of Sequences: 27780
Number of extensions: 426568
Number of successful extensions: 1064
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)