Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13c09
         (836 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    26   0.50 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    25   1.1  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    25   1.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   4.6  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 25.8 bits (54), Expect = 0.50
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 526 SNASPRSPSYAWTIESD 476
           SN +PRSP  AW  +SD
Sbjct: 909 SNVTPRSPGRAWPGDSD 925


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +3

Query: 24  SYLNLDEFVSKQVWALSMVLDHNKNILALLSPPIQLDYYLLR 149
           S +NLD+   + ++   + L      L L+S   + DY L R
Sbjct: 316 SVMNLDDLTRRSLYLSDIPLHDATRDLVLMSEQFEADYKLTR 357


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +3

Query: 24  SYLNLDEFVSKQVWALSMVLDHNKNILALLSPPIQLDYYLLR 149
           S +NLD+   + ++   + L      L L+S   + DY L R
Sbjct: 316 SVMNLDDLTRRSLYLSDIPLHDATRDLVLMSEQFEADYKLTR 357


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +3

Query: 312 YTHDQPSLPRKAFSFCEYPVPNELP 386
           Y H    L  K + FCEY  PN  P
Sbjct: 38  YDHPTTLLKLKRYLFCEYD-PNVRP 61


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 240,476
Number of Sequences: 438
Number of extensions: 6005
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)