Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13c08
         (787 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    28   1.3  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    27   2.3  
SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.0  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    25   9.3  

>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -2

Query: 639 GELLTAHGGGEMGAYLPQSRNKTVLRSLGEHETGGRVERLRF 514
           G+++ A G G+ G Y+P   +K  L +L ++  GG  + L F
Sbjct: 742 GDVIHALGSGKEGTYIPYRNSK--LTNLLQYSLGGNSKTLMF 781


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = -3

Query: 776 TETERREAKRPPEIASGVDKKPDIKNSGSRRRFRRKQVASPASLRK--ASFSPPTEVAKW 603
           TE +R+EA    EI+   D+K  +K    R + ++K + S   + K   S++ P  +A  
Sbjct: 163 TEKQRKEAIARGEISDSEDEKHTVKQKPLREK-KKKPLKSSEEISKDMGSYNLPRFLASL 221

Query: 602 APTCLNRETK 573
               LN +TK
Sbjct: 222 IDASLN-DTK 230


>SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = +2

Query: 605 ISPPPWAVRSSPSSKTPATRPASA*TVSGCHCSLYPAFYRRLTQSRAVVSLPAAR 769
           + PP W    +    +P +  AS    S    S  PA  RRL+ S +  S P  R
Sbjct: 47  LRPPGWQPPVNTGPTSPVSINASNAAPSNLKASYIPANPRRLSSSTSSASSPPLR 101


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 296 VKWLLEPIDIYDAKVPTNLRYKF*GLSIVATAAPPSKPK 180
           V+WLL    + +  + TNL+Y    L+I+   +  +K K
Sbjct: 244 VEWLLSRSSVDETSISTNLQYAVEILAIILANSKEAKLK 282


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,996,783
Number of Sequences: 5004
Number of extensions: 62268
Number of successful extensions: 151
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)