Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13c08
(787 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0108 + 14657020-14657193,14659040-14659355,14659728-146598... 33 0.34
07_01_0101 - 752935-753223,753311-753408,753674-753764,753844-75... 30 1.8
01_06_1009 + 33796450-33796824,33796926-33796970,33797069-337971... 30 1.8
03_05_0383 + 23656041-23656096,23657189-23657255,23657599-236577... 29 3.2
03_04_0157 + 17791540-17791681,17792809-17792908,17793386-177934... 29 5.5
03_05_0647 + 26390924-26391259 28 7.3
12_02_0046 + 12830974-12832386 28 9.7
05_07_0200 - 28368890-28369021,28369169-28369303,28369918-283699... 28 9.7
>09_04_0108 +
14657020-14657193,14659040-14659355,14659728-14659887,
14661265-14661725,14663778-14663856,14664732-14664882,
14665414-14665467,14665724-14665888
Length = 519
Score = 32.7 bits (71), Expect = 0.34
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = -3
Query: 686 RRFRRKQVASPASLRKASFSPPTEVAKWAPTCLNRETKPYYE 561
RRF + VASP ++ K + +PP++ KW T ++ YYE
Sbjct: 36 RRFAVRSVASPPTVPKPA-APPSKTGKWQWTFEDKPINIYYE 76
>07_01_0101 -
752935-753223,753311-753408,753674-753764,753844-753882,
754019-754110,754535-754634,754742-754828,754949-755250,
756036-756242,756319-756405,756978-757058,757257-757365,
758037-758093,758188-758258,758414-758521,758874-758974,
759111-759177,759434-759535,759618-759662,759916-760511,
761956-762065,762165-762280
Length = 984
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -3
Query: 584 RETKPYYEAWVNTKLA-AVSRGCDLNDRERTRLMETFRKALECRIDSPELVYE 429
RET Y EA + A A R D + T+ +E KALE +SP++++E
Sbjct: 292 RETPTYPEALIGRGTAYAFQRELDSAISDFTKAVEDLTKALEFEPNSPDILHE 344
>01_06_1009 +
33796450-33796824,33796926-33796970,33797069-33797182,
33797679-33797759,33798038-33798211,33798353-33798438,
33799157-33799901
Length = 539
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Frame = +2
Query: 599 APISPPPWA--VRSSPSSKT---PATRPASA*TVSGCHCSL 706
+P SPPP +R P+S T ATRP+S ++ CHC L
Sbjct: 5 SPPSPPPPLPPLRRRPASPTLLAVATRPSSLLSLPHCHCGL 45
>03_05_0383 +
23656041-23656096,23657189-23657255,23657599-23657745,
23658094-23658178,23658380-23658551,23660056-23660176,
23660431-23660550,23660861-23661073,23661154-23661213,
23661306-23661424,23661609-23661667,23661798-23662132
Length = 517
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 498 PFSIVQIATSRHGR-QFRVHPSFVIRFCFAIEASRRP 605
P S +I T++ G ++R HP ++ ++C A E R P
Sbjct: 211 PISEYEIPTNKDGHIEYRAHPFWMQKYCPAHETDRTP 247
>03_04_0157 + 17791540-17791681,17792809-17792908,17793386-17793477,
17793562-17793620,17794135-17795637,17796478-17796720,
17796831-17797145,17797571-17797573,17798399-17798638,
17798975-17799259,17799335-17799556,17800105-17800266,
17800411-17800545,17802452-17802688,17802787-17802960,
17803692-17803934
Length = 1384
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 672 EAGRVAGVFEEGELLTAHGGGEMG 601
+AG + V+ +G +L HGG EMG
Sbjct: 1068 QAGALVQVYTDGTVLVTHGGVEMG 1091
>03_05_0647 + 26390924-26391259
Length = 111
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Frame = -1
Query: 502 KGPG*WR-RLERHWNAESIARNW 437
+G WR RLERHW E R W
Sbjct: 65 RGVARWRVRLERHWQEEPERRRW 87
>12_02_0046 + 12830974-12832386
Length = 470
Score = 27.9 bits (59), Expect = 9.7
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +2
Query: 533 RPPVSCSPKLRNTVLFRD*GK*APISPPPWAVRSSPSSKTPATR 664
R PVS SP R + + A +PPPW V P P+ R
Sbjct: 291 RGPVSASPAARQSCV-------AASAPPPWCVPPPPRPAPPSRR 327
>05_07_0200 -
28368890-28369021,28369169-28369303,28369918-28369947,
28370019-28370093,28370222-28370333,28370440-28370621,
28370723-28370854,28372193-28373479
Length = 694
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 590 GK*APISPPPWAVRSSPSSKTPATRPASA*TVSGC 694
G AP PPP A + + + TPAT +SA C
Sbjct: 338 GPPAPPPPPPPAAKRTSRTSTPATTSSSAPASGPC 372
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,375,179
Number of Sequences: 37544
Number of extensions: 474873
Number of successful extensions: 1554
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1552
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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